make-zigzag-subsamples.py doesn't output the union, rips-consistency-zigzag.cpp fixed show_progress
project (Dionysus)
cmake_minimum_required (VERSION 2.4)
option (logging "Build Dionysus with logging on" OFF)
option (counters "Build Dionysus with counters on" OFF)
option (debug "Build Dionysus with debugging on" OFF)
option (optimize "Build Dionysus with optimization" ON)
option (use_dsrpdb "Build examples that use DSR-PDB" OFF)
option (use_synaps "Build examples that use SYNAPS" OFF)
# Find everything that's always required
find_package (Boost REQUIRED COMPONENTS program_options python serialization signals)
find_package (Doxygen)
if (use_dsrpdb)
find_library (dsrpdb_LIBRARY NAMES dsrpdb)
find_path (dsrpdb_INCLUDE_DIR dsrpdb/Protein.h)
endif (use_dsrpdb)
# CGAL
find_package (CGAL)
#add_definitions (-DCGAL_NO_ASSERTIONS -DCGAL_NO_PRECONDITIONS)
# SYNAPS
if (use_synaps)
add_definitions (-DBOOST_UBLAS_TYPE_CHECK=0)
find_library (synaps_LIBRARY NAMES synaps)
set (synaps_libraries ${synaps_LIBRARY}
${gmp_LIBRARY}
${gmpxx_LIBRARY})
endif (use_synaps)
# Debugging
if (debug)
if (optimize)
set (cxx_flags ${CMAKE_CXX_FLAGS_RELWITHDEBINFO})
else (optimize)
set (cxx_flags ${CMAKE_CXX_FLAGS_DEBUG})
endif (optimize)
else (debug)
if (optimize)
set (cxx_flags ${CMAKE_CXX_FLAGS_RELEASE})
else (optimize)
set (cxx_flags ${CMAKE_CXX_FLAGS})
endif (optimize)
endif (debug)
add_definitions (${cxx_flags})
# Logging
if (logging)
find_library (rlog_LIBRARY NAMES rlog)
find_path (rlog_INCLUDE_DIR rlog/rlog.h)
set (rlog_INCLUDE_DIR ${rlog_INCLUDE_DIR})
add_definitions (-DLOGGING -DRLOG_COMPONENT=dionysus)
set (libraries ${libraries} ${rlog_LIBRARY})
endif (logging)
# Counters
if (counters)
add_definitions (-DCOUNTERS)
endif (counters)
# Set includes
include_directories (${CMAKE_CURRENT_BINARY_DIR}
${CMAKE_CURRENT_SOURCE_DIR}/include
${Boost_INCLUDE_DIR}
${dsrpdb_INCLUDE_DIR}
${cwd_INCLUDE_DIR}
${rlog_INCLUDE_DIR})
# Doxygen (FIXME)
if (DOXYGEN_FOUND)
# add_custom_target (docs ALL
# ${DOXYGEN_EXECUTABLE} Doxyfile
# DEPENDS Doxyfile)
endif (DOXYGEN_FOUND)
# Process subdirectories
add_subdirectory (examples)
add_subdirectory (tests)
add_subdirectory (tools)
add_subdirectory (bindings)