Intermediate commit while converting to the new architecture * Converted Filtration into StaticPersistence and DynamicPersistenceTrails (both right now work with the underlying std::vector rather than std::list order) * Filtration is now just an auxilliary glue (a map between Complex and Persistence) * Whether chains are vectors or lists can be interchanged * Added PersistenceDiagram with a simple bottleneck_distance() function * Converted triangle, alphashapes3d, and cech-complex examples * Lots of organizational changes (factoring utilities out into containers.h, indirect.h, property-maps.h) * Trying to document along the way with NaturalDocs-type comments

From: Dmitriy Morozov <morozov@cs.duke.edu>
Date: Thu, 21 Feb 2008 04:23:29 -0500
State: fixed
Subject: More elabroate domain in avida-landscape
Message-Id: <91986229a564f7e0-0-artemis@metatron>

Try minimum spanning tree (i.e., take only negative edges from avida-distance).
Try a combination: all edges up to a certain (realtively small) length + MST.