Mon, 27 Nov 2017 10:26:59 -0800 Add CGAL pre-4.11 support back to e/a/alphashapes3d-periodic default tip
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 27 Nov 2017 10:26:59 -0800] rev 293
Add CGAL pre-4.11 support back to e/a/alphashapes3d-periodic
Sun, 26 Nov 2017 18:42:36 -0800 Vanessa's fix for e/a/alphashapes3d-periodic for CGAL 4.11
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 26 Nov 2017 18:42:36 -0800] rev 292
Vanessa's fix for e/a/alphashapes3d-periodic for CGAL 4.11
Sun, 26 Nov 2017 12:07:49 -0800 Add Vanessa Robins' periodic alpha shapes 2D code
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 26 Nov 2017 12:07:49 -0800] rev 291
Add Vanessa Robins' periodic alpha shapes 2D code
Thu, 07 Sep 2017 17:35:28 -0700 Add Vanessa Robins' periodic alpha shapes code
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Sep 2017 17:35:28 -0700] rev 290
Add Vanessa Robins' periodic alpha shapes code
Fri, 14 Jul 2017 14:07:05 -0700 Add a note about Dionysus 2 to the docs
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 14 Jul 2017 14:07:05 -0700] rev 289
Add a note about Dionysus 2 to the docs
Fri, 14 Jul 2017 14:04:13 -0700 Merge
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 14 Jul 2017 14:04:13 -0700] rev 288
Merge
Sun, 27 Apr 2014 13:49:14 -0700 Added a practical guide slides and examples to the docs dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 27 Apr 2014 13:49:14 -0700] rev 287
Added a practical guide slides and examples to the docs
Tue, 27 Jun 2017 09:38:20 -0700 Remove 'hg up tip' from doc/get-build-install.rst
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 27 Jun 2017 09:38:20 -0700] rev 286
Remove 'hg up tip' from doc/get-build-install.rst
Tue, 27 Jun 2017 09:37:05 -0700 Merge dev into default, to avoid the need for 'hg up tip' after clone
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 27 Jun 2017 09:37:05 -0700] rev 285
Merge dev into default, to avoid the need for 'hg up tip' after clone
Sun, 16 Apr 2017 13:35:24 -0700 Add LICENSE + LEGAL dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 16 Apr 2017 13:35:24 -0700] rev 284
Add LICENSE + LEGAL
Mon, 22 Aug 2016 11:17:45 -0700 Add register_ptr_to_python to PersistenceDiagram bindings to match changes in Boost.Python dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 22 Aug 2016 11:17:45 -0700] rev 283
Add register_ptr_to_python to PersistenceDiagram bindings to match changes in Boost.Python
Mon, 05 Oct 2015 09:02:38 -0700 Fix compilation with Boost 1.58 (load_construct_data_adl error) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 05 Oct 2015 09:02:38 -0700] rev 282
Fix compilation with Boost 1.58 (load_construct_data_adl error)
Mon, 02 Mar 2015 13:20:51 +0100 Added executable to compute Wasserstein distance. dev
"Arnur Nigmetov <a.nigmetov@gmail.com>" [Mon, 02 Mar 2015 13:20:51 +0100] rev 281
Added executable to compute Wasserstein distance. Powering to 1/q is done in output. Maybe, should be changed in the function itself?
Fri, 06 Dec 2013 19:09:12 -0800 Disabled glibcxx specific concept checks dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 06 Dec 2013 19:09:12 -0800] rev 280
Disabled glibcxx specific concept checks
Fri, 06 Dec 2013 19:02:42 -0800 Dave Millman's fix for and rlog problem dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 06 Dec 2013 19:02:42 -0800] rev 279
Dave Millman's fix for and rlog problem
Wed, 16 Oct 2013 09:58:02 -0700 Increase template depth to fix a bug with XCode 5 dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 16 Oct 2013 09:58:02 -0700] rev 278
Increase template depth to fix a bug with XCode 5
Fri, 09 Aug 2013 15:08:23 -0700 Brit Fasy's fix to compile with logging=on dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 09 Aug 2013 15:08:23 -0700] rev 277
Brit Fasy's fix to compile with logging=on
Wed, 10 Jul 2013 14:39:29 -0700 lscubes.py output infinite pairs + small bugfix dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 10 Jul 2013 14:39:29 -0700] rev 276
lscubes.py output infinite pairs + small bugfix
Mon, 10 Jun 2013 17:25:57 +0200 Fixed non-POD array problem in homology-zigzags dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 10 Jun 2013 17:25:57 +0200] rev 275
Fixed non-POD array problem in homology-zigzags
Mon, 10 Jun 2013 16:58:01 +0200 Added homology zigzags by Steve Oudot and Don Sheehy dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 10 Jun 2013 16:58:01 +0200] rev 274
Added homology zigzags by Steve Oudot and Don Sheehy
Fri, 26 Apr 2013 22:31:58 -0700 Added standalone bottleneck-distance.cpp dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 26 Apr 2013 22:31:58 -0700] rev 273
Added standalone bottleneck-distance.cpp
Thu, 28 Feb 2013 11:12:02 +0800 Dave Millman's fixes to compile with LLVM-based compilers dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 28 Feb 2013 11:12:02 +0800] rev 272
Dave Millman's fixes to compile with LLVM-based compilers
Fri, 26 Oct 2012 11:45:58 -0700 Added CGAL_USE_FILE + added option use_cgal dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 26 Oct 2012 11:45:58 -0700] rev 271
Added CGAL_USE_FILE + added option use_cgal
Sun, 10 Jun 2012 18:54:26 -0700 Bug in show_diagram() with empty diagrams dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 10 Jun 2012 18:54:26 -0700] rev 270
Bug in show_diagram() with empty diagrams
Sun, 10 Jun 2012 11:26:38 -0700 subcomplex in show_complex() + pan/zoom in ComplexViewer2D dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 10 Jun 2012 11:26:38 -0700] rev 269
subcomplex in show_complex() + pan/zoom in ComplexViewer2D
Sat, 09 Jun 2012 12:56:36 -0700 DiagramViewer can show multiple diagrams at once dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 09 Jun 2012 12:56:36 -0700] rev 268
DiagramViewer can show multiple diagrams at once
Sat, 09 Jun 2012 12:17:17 -0700 CohomologyPersistence returns dying cocycles + StaticCohomologyPersistence records them and normalizes coefficients + minor changes dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 09 Jun 2012 12:17:17 -0700] rev 267
CohomologyPersistence returns dying cocycles + StaticCohomologyPersistence records them and normalizes coefficients + minor changes
Fri, 08 Jun 2012 15:40:09 -0700 Display lists in ComplexViewer3D + circular.smooth() raises exceptions dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 08 Jun 2012 15:40:09 -0700] rev 266
Display lists in ComplexViewer3D + circular.smooth() raises exceptions
Thu, 07 Jun 2012 21:36:53 -0700 Set center and radius in ComplexViewer3D dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Jun 2012 21:36:53 -0700] rev 265
Set center and radius in ComplexViewer3D
Thu, 07 Jun 2012 21:21:11 -0700 Points at infinity in DiagramViewer dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Jun 2012 21:21:11 -0700] rev 264
Points at infinity in DiagramViewer
Thu, 07 Jun 2012 21:16:06 -0700 Fixed scale points in the diagram + noise filtering dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Jun 2012 21:16:06 -0700] rev 263
Fixed scale points in the diagram + noise filtering
Thu, 07 Jun 2012 11:57:33 -0700 Added pan + zoom to diagram viewer; show_diagram() didn't return; added PyQt, PyOpenGL, NumPy as dependencies in the docs dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Jun 2012 11:57:33 -0700] rev 262
Added pan + zoom to diagram viewer; show_diagram() didn't return; added PyQt, PyOpenGL, NumPy as dependencies in the docs
Thu, 07 Jun 2012 10:52:15 -0700 Straightened out QApplication problems (made it global) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Jun 2012 10:52:15 -0700] rev 261
Straightened out QApplication problems (made it global)
Thu, 07 Jun 2012 10:11:01 -0700 Started show_complex_3D() dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Jun 2012 10:11:01 -0700] rev 260
Started show_complex_3D()
Wed, 06 Jun 2012 23:15:57 -0700 Fixed bugs in diagram.py and adaptor.py + added coloring of points in show_complex_2D(); Filtration can be initialized from iterator without comparison dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 06 Jun 2012 23:15:57 -0700] rev 259
Fixed bugs in diagram.py and adaptor.py + added coloring of points in show_complex_2D(); Filtration can be initialized from iterator without comparison
Tue, 05 Jun 2012 17:53:08 -0700 Added viewer.show_complex_2D + center points in the persistence diagram dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 05 Jun 2012 17:53:08 -0700] rev 258
Added viewer.show_complex_2D + center points in the persistence diagram
Tue, 05 Jun 2012 17:04:10 -0700 Moved dionysus.circular into its own subdirectory + added dionysus.viewer dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 05 Jun 2012 17:04:10 -0700] rev 257
Moved dionysus.circular into its own subdirectory + added dionysus.viewer
Tue, 05 Jun 2012 14:50:58 -0700 Added docs for StaticCohomologyPersistence + ImagePersistence + circular.smooth + minor fixes in adaptor.py dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 05 Jun 2012 14:50:58 -0700] rev 256
Added docs for StaticCohomologyPersistence + ImagePersistence + circular.smooth + minor fixes in adaptor.py
Mon, 04 Jun 2012 09:05:45 -0700 Added smooth() to Python binding + fixed a bug in adaptor.py dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 04 Jun 2012 09:05:45 -0700] rev 255
Added smooth() to Python binding + fixed a bug in adaptor.py
Sun, 03 Jun 2012 16:39:18 -0700 Merged upstream dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 03 Jun 2012 16:39:18 -0700] rev 254
Merged upstream
Sun, 03 Jun 2012 16:17:27 -0700 Added adaptor for StaticCohomologyPersistence and ImagePersistence dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 03 Jun 2012 16:17:27 -0700] rev 253
Added adaptor for StaticCohomologyPersistence and ImagePersistence
Mon, 14 May 2012 10:47:46 -0700 Added a note about reducing matrix Z in i/t/zigzag-persistence.hpp dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 14 May 2012 10:47:46 -0700] rev 252
Added a note about reducing matrix Z in i/t/zigzag-persistence.hpp
Fri, 11 May 2012 17:06:55 -0700 Merge dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 11 May 2012 17:06:55 -0700] rev 251
Merge
Fri, 11 May 2012 10:25:57 -0700 Added store_negative argument to StaticPersistence.pair_simpices() dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 11 May 2012 10:25:57 -0700] rev 250
Added store_negative argument to StaticPersistence.pair_simpices()
Thu, 10 May 2012 15:52:53 -0700 Added a note about wasserstein_distance() to documentation + cleaned up docs for init_diagrams() dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 10 May 2012 15:52:53 -0700] rev 249
Added a note about wasserstein_distance() to documentation + cleaned up docs for init_diagrams()
Thu, 10 May 2012 15:46:52 -0700 Inlcuded munkres.cpp from munkres.h + matrix.cpp -> matrix.hpp dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 10 May 2012 15:46:52 -0700] rev 248
Inlcuded munkres.cpp from munkres.h + matrix.cpp -> matrix.hpp
Thu, 10 May 2012 15:42:21 -0700 Added wasserstein_distance() dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 10 May 2012 15:42:21 -0700] rev 247
Added wasserstein_distance()
Thu, 10 May 2012 14:24:40 -0700 Exposed init_diagrams() to Python dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 10 May 2012 14:24:40 -0700] rev 246
Exposed init_diagrams() to Python
Tue, 08 May 2012 13:07:28 -0700 Minor changes to compile with GCC 4.7 dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 08 May 2012 13:07:28 -0700] rev 245
Minor changes to compile with GCC 4.7
Mon, 25 Jul 2011 23:21:29 -0700 Added cohomology/candidates counter to i/t/cohomology-persistence.hpp dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 25 Jul 2011 23:21:29 -0700] rev 244
Added cohomology/candidates counter to i/t/cohomology-persistence.hpp
Fri, 06 May 2011 10:38:06 -0700 Minor fixes in tools/draw-diagram dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 06 May 2011 10:38:06 -0700] rev 243
Minor fixes in tools/draw-diagram
Tue, 05 Apr 2011 18:29:50 -0700 alphashapes2d can handle degenerate inputs (thanks to Taras Galkovskyi for the bug report and the fix) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 05 Apr 2011 18:29:50 -0700] rev 242
alphashapes2d can handle degenerate inputs (thanks to Taras Galkovskyi for the bug report and the fix)
Fri, 28 Jan 2011 08:01:37 -0800 Fixed combinations in closure() for older versions of Python dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 28 Jan 2011 08:01:37 -0800] rev 241
Fixed combinations in closure() for older versions of Python
Fri, 07 Jan 2011 23:11:46 -0800 closure() in Python can handle simplex data dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 07 Jan 2011 23:11:46 -0800] rev 240
closure() in Python can handle simplex data
Mon, 20 Dec 2010 11:21:57 -0800 Fixed a typo in b/p/persistence-diagram.cpp dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 20 Dec 2010 11:21:57 -0800] rev 239
Fixed a typo in b/p/persistence-diagram.cpp
Wed, 08 Dec 2010 10:29:26 -0800 Added a note about GPL to the documentation dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 08 Dec 2010 10:29:26 -0800] rev 238
Added a note about GPL to the documentation
Fri, 03 Dec 2010 11:26:12 -0800 Cleaned up CMake files to play nice with CGAL dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 03 Dec 2010 11:26:12 -0800] rev 237
Cleaned up CMake files to play nice with CGAL
Sat, 09 Oct 2010 13:56:26 -0700 Cleaned up PersistenceDiagram bindings dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 09 Oct 2010 13:56:26 -0700] rev 236
Cleaned up PersistenceDiagram bindings
Mon, 04 Oct 2010 18:03:35 -0700 Fixed a link to SYNAPS dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 04 Oct 2010 18:03:35 -0700] rev 235
Fixed a link to SYNAPS
Tue, 14 Sep 2010 15:36:13 -0700 Merged in Python bindings for DynamicPersistenceChains dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 14 Sep 2010 15:36:13 -0700] rev 234
Merged in Python bindings for DynamicPersistenceChains
Tue, 14 Sep 2010 15:00:34 -0700 Added documentation for DynamicPersistenceChains dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 14 Sep 2010 15:00:34 -0700] rev 233
Added documentation for DynamicPersistenceChains
Sun, 12 Sep 2010 09:55:44 -0700 Added Python bindings for DynamicPersistenceChains dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 12 Sep 2010 09:55:44 -0700] rev 232
Added Python bindings for DynamicPersistenceChains
Tue, 14 Sep 2010 11:34:11 -0700 Added the ability to pickle Simplex class in Python dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 14 Sep 2010 11:34:11 -0700] rev 231
Added the ability to pickle Simplex class in Python
Tue, 14 Sep 2010 11:12:33 -0700 Added ability to iterate over ZigzagPersistence cycles in Python dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 14 Sep 2010 11:12:33 -0700] rev 230
Added ability to iterate over ZigzagPersistence cycles in Python
Fri, 10 Sep 2010 21:21:27 -0700 Fixed a typo in the documentation of SPNode.cycle dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 10 Sep 2010 21:21:27 -0700] rev 229
Fixed a typo in the documentation of SPNode.cycle
Tue, 07 Sep 2010 13:54:53 -0700 Added Python closure function (for computing a k-skeleton of a closure of a list of simplices) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 07 Sep 2010 13:54:53 -0700] rev 228
Added Python closure function (for computing a k-skeleton of a closure of a list of simplices)
Thu, 02 Sep 2010 09:13:42 -0700 Removed the unnecessary typename in filtration-homology.cpp dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 02 Sep 2010 09:13:42 -0700] rev 227
Removed the unnecessary typename in filtration-homology.cpp
Mon, 30 Aug 2010 12:28:58 -0700 Added output of essential cycles for any given input filtration dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 30 Aug 2010 12:28:58 -0700] rev 226
Added output of essential cycles for any given input filtration
Wed, 25 Aug 2010 14:36:11 -0700 Minor touches in documentation dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 25 Aug 2010 14:36:11 -0700] rev 225
Minor touches in documentation
Wed, 25 Aug 2010 14:31:36 -0700 Merged docs with upstream dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 25 Aug 2010 14:31:36 -0700] rev 224
Merged docs with upstream
Thu, 15 Jul 2010 10:25:08 -0700 CGAL is unncessary for vineyards (update in the documentation) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 15 Jul 2010 10:25:08 -0700] rev 223
CGAL is unncessary for vineyards (update in the documentation)
Wed, 25 Aug 2010 14:29:54 -0700 Merged in Aravind's changes dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 25 Aug 2010 14:29:54 -0700] rev 222
Merged in Aravind's changes
Wed, 18 Aug 2010 15:35:48 -0700 Changed the first iterator of PersistenceDiagram to accept dimension as well. Modified documentation. dev
Aravindakshan Babu <akshan@stanford.edu> [Wed, 18 Aug 2010 15:35:48 -0700] rev 221
Changed the first iterator of PersistenceDiagram to accept dimension as well. Modified documentation.
Wed, 18 Aug 2010 12:05:18 -0700 Removed the points iterator in PersistenceDaigram; replaced it with a __iter__ method. dev
Aravindakshan Babu <akshan@stanford.edu> [Wed, 18 Aug 2010 12:05:18 -0700] rev 220
Removed the points iterator in PersistenceDaigram; replaced it with a __iter__ method. Got rid of some python code in __init__.py, since it was not needed with the above change. Changed the docs to reflect this.
Tue, 17 Aug 2010 22:19:19 -0700 Added documentation for the python classes Point and PersistenceDiagram. Removed the __sub__ method for PersistenceDiagram. Minor renaming. dev
Aravindakshan Babu <akshan@stanford.edu> [Tue, 17 Aug 2010 22:19:19 -0700] rev 219
Added documentation for the python classes Point and PersistenceDiagram. Removed the __sub__ method for PersistenceDiagram. Minor renaming. Renamed BottleneckDistance to bottleneck_distance. Renamed intervals iterator for PersistenceDiagram to points. Seems in better conformance with usage.
Wed, 11 Aug 2010 17:07:09 -0700 Added a __iter__ method to the PersistenceDiagram class in python. Renamed the points iterator to the intervals iterator. dev
Aravindakshan Babu <akshan@stanford.edu> [Wed, 11 Aug 2010 17:07:09 -0700] rev 218
Added a __iter__ method to the PersistenceDiagram class in python. Renamed the points iterator to the intervals iterator.
Thu, 08 Jul 2010 23:50:39 -0700 Added extra functionality to Point class( an iterator ) and PersistenceDiagram( dimension property and __len__ func ). dev
Aravindakshan Babu <akshan@stanford.edu> [Thu, 08 Jul 2010 23:50:39 -0700] rev 217
Added extra functionality to Point class( an iterator ) and PersistenceDiagram( dimension property and __len__ func ). persistence-diagram.h: Added a new read-only dimension member and member function to access it. With a new constructor that that takes in an int type to initialize dimension. persistence-diagram.cpp: Added new bp::init constructor. Takes in an integer type to initialize the dimension. Exposed the dimension property. Exposed the size property via a __len__ method. __init__.py: Added an iterator for Point objects. This iterates over the coords and then the data( if present ).
Fri, 02 Jul 2010 17:08:02 -0700 Made the data argument in Point's __init__method to be an optional argument by making it a boost::python::optional. dev
Aravindakshan Babu <akshan@stanford.edu> [Fri, 02 Jul 2010 17:08:02 -0700] rev 216
Made the data argument in Point's __init__method to be an optional argument by making it a boost::python::optional.
Fri, 02 Jul 2010 04:19:29 -0700 Added code to expose the persistence_diagram class, the bottleneck_distance function and the point class to python. dev
Aravindakshan Babu <akshan@stanford.edu> [Fri, 02 Jul 2010 04:19:29 -0700] rev 215
Added code to expose the persistence_diagram class, the bottleneck_distance function and the point class to python. Most of the commonly used methods for each class have been exported. The constructor for point now requires that a data argument be provided along with x and y coord. This needs to be made optional. The constructor for persistence_diagram could possibly be rewritten as well.
Thu, 15 Jul 2010 10:20:06 -0700 Merged docs with upstream dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 15 Jul 2010 10:20:06 -0700] rev 214
Merged docs with upstream
Thu, 15 Jul 2010 10:19:18 -0700 Removed the warning about compiler versions (seems unnecessary after Andrew's fixes) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 15 Jul 2010 10:19:18 -0700] rev 213
Removed the warning about compiler versions (seems unnecessary after Andrew's fixes)
Mon, 12 Jul 2010 09:53:30 -0700 Fixed path for lsfiltration.py dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 12 Jul 2010 09:53:30 -0700] rev 212
Fixed path for lsfiltration.py
Mon, 05 Jul 2010 23:51:26 -0700 Bug in the tutorial: simplices = [] -> simplices = Filtration() dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 05 Jul 2010 23:51:26 -0700] rev 211
Bug in the tutorial: simplices = [] -> simplices = Filtration()
Tue, 13 Apr 2010 09:09:04 -0700 More typos in the docs dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 13 Apr 2010 09:09:04 -0700] rev 210
More typos in the docs
Mon, 12 Apr 2010 19:01:01 -0700 Fixed a link: dionysis -> dionysus dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 12 Apr 2010 19:01:01 -0700] rev 209
Fixed a link: dionysis -> dionysus
Tue, 20 Apr 2010 13:58:23 -0700 Andrew Yarmola's fix to the in-class intialization syntax in OrderList<T> dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 20 Apr 2010 13:58:23 -0700] rev 208
Andrew Yarmola's fix to the in-class intialization syntax in OrderList<T>
Tue, 09 Mar 2010 15:22:57 -0800 Added Persistence::initialize(f) + fixed minor bug LinearKernel::sign_at_negative_infinity() dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 09 Mar 2010 15:22:57 -0800] rev 207
Added Persistence::initialize(f) + fixed minor bug LinearKernel::sign_at_negative_infinity()
Sat, 06 Mar 2010 14:39:15 -0800 Added insert-at-the-end optimization for CohomologyPersistence::add_cocycle() dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 06 Mar 2010 14:39:15 -0800] rev 206
Added insert-at-the-end optimization for CohomologyPersistence::add_cocycle()
Fri, 05 Mar 2010 09:26:54 -0800 Count cocycles in CohomologyPersistence dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 05 Mar 2010 09:26:54 -0800] rev 205
Count cocycles in CohomologyPersistence
Tue, 23 Feb 2010 17:39:15 -0800 Andrew Yarmola's compilation fix for MacOSX. dev
Mikael Vejdemo Johansson <mik@math.stanford.edu> [Tue, 23 Feb 2010 17:39:15 -0800] rev 204
Andrew Yarmola's compilation fix for MacOSX.
Mon, 22 Feb 2010 17:24:02 -0800 Removed unused instrumentation of cohomology and unnecessary includes dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 22 Feb 2010 17:24:02 -0800] rev 203
Removed unused instrumentation of cohomology and unnecessary includes
Tue, 09 Feb 2010 11:05:48 -0800 Removed reference to reference in ThreeOutcomeComparison dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 09 Feb 2010 11:05:48 -0800] rev 202
Removed reference to reference in ThreeOutcomeComparison
Sun, 07 Feb 2010 21:10:54 -0800 Made EventQueue into a binary heap (for efficiency and sanity) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 07 Feb 2010 21:10:54 -0800] rev 201
Made EventQueue into a binary heap (for efficiency and sanity)
Sun, 07 Feb 2010 10:46:23 -0800 Replaced list with multi_index representation in EventQueue making it more efficient dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 07 Feb 2010 10:46:23 -0800] rev 200
Replaced list with multi_index representation in EventQueue making it more efficient
Sat, 06 Feb 2010 23:22:43 -0800 Switched to internal KineticSort dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 06 Feb 2010 23:22:43 -0800] rev 199
Switched to internal KineticSort
Fri, 05 Feb 2010 11:49:52 -0800 Added linear kernel for my own KineticSort dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 05 Feb 2010 11:49:52 -0800] rev 198
Added linear kernel for my own KineticSort
Fri, 05 Feb 2010 11:07:42 -0800 Commented out QField to get rid of the artifical dependence on GMP dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 05 Feb 2010 11:07:42 -0800] rev 197
Commented out QField to get rid of the artifical dependence on GMP
Thu, 04 Feb 2010 23:43:36 -0800 Fixed non-copyable temporary bug dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 04 Feb 2010 23:43:36 -0800] rev 196
Fixed non-copyable temporary bug
Wed, 03 Feb 2010 14:51:38 -0800 Fixed the duplicates (degeneracy) and another assertion problem in LSVineyard dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 03 Feb 2010 14:51:38 -0800] rev 195
Fixed the duplicates (degeneracy) and another assertion problem in LSVineyard
Wed, 03 Feb 2010 11:20:40 -0800 Removed a buggy assertion in LSVineard::transpose_vertices() (j points at the end() when moving the last simplex of the filtration) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 03 Feb 2010 11:20:40 -0800] rev 194
Removed a buggy assertion in LSVineard::transpose_vertices() (j points at the end() when moving the last simplex of the filtration)
Tue, 02 Feb 2010 23:43:46 -0800 StaticPersistence::pair_simplices() has an option to not display progress (LSVineyard uses it during consistency checking) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 02 Feb 2010 23:43:46 -0800] rev 193
StaticPersistence::pair_simplices() has an option to not display progress (LSVineyard uses it during consistency checking)
Tue, 26 Jan 2010 11:14:50 -0800 Added rips-explicit-cohomology dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 26 Jan 2010 11:14:50 -0800] rev 192
Added rips-explicit-cohomology
Tue, 26 Jan 2010 11:00:51 -0800 Moved lsfiltration.py into examples/pl-functions + added lscubes.py example (cubical lower-star filtration) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 26 Jan 2010 11:00:51 -0800] rev 191
Moved lsfiltration.py into examples/pl-functions + added lscubes.py example (cubical lower-star filtration)
Tue, 12 Jan 2010 14:36:38 -0800 Fixed Python constructor of CohomologyPersistence + minor changes to cocycle.py dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 12 Jan 2010 14:36:38 -0800] rev 190
Fixed Python constructor of CohomologyPersistence + minor changes to cocycle.py
Mon, 11 Jan 2010 10:21:37 -0800 vertex_coface -> vertex_cofaces in Rips documentation (in Python) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 11 Jan 2010 10:21:37 -0800] rev 189
vertex_coface -> vertex_cofaces in Rips documentation (in Python)
Sat, 09 Jan 2010 15:03:52 -0800 Henry Adams' fixes to python/dionysus/zigzag.py + added CohomologyPersistence.show_cocycles method dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 09 Jan 2010 15:03:52 -0800] rev 188
Henry Adams' fixes to python/dionysus/zigzag.py + added CohomologyPersistence.show_cocycles method
Thu, 07 Jan 2010 10:27:18 -0800 CohomologyPersistence::add returns the dying cocycle dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 Jan 2010 10:27:18 -0800] rev 187
CohomologyPersistence::add returns the dying cocycle
Tue, 05 Jan 2010 11:02:07 -0800 Check Boost version in include/utilities/property-maps.h + minor changes to cocycle.py dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 05 Jan 2010 11:02:07 -0800] rev 186
Check Boost version in include/utilities/property-maps.h + minor changes to cocycle.py
Thu, 31 Dec 2009 11:28:49 -0800 Added pl-vineyard documentation dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 31 Dec 2009 11:28:49 -0800] rev 185
Added pl-vineyard documentation
Fri, 25 Dec 2009 06:56:27 -0800 Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea: dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 25 Dec 2009 06:56:27 -0800] rev 184
Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea: * added program options to pdbdistance-vineyard * pdbdistance-vineyard takes frame list in a file * more logging * verification of pairing after vertex transpositions (commented out)
Sun, 20 Dec 2009 10:43:00 -0800 Moved files around: lsvineyard.h -> include/topology, examples/grid -> examples/pl-functions dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 20 Dec 2009 10:43:00 -0800] rev 183
Moved files around: lsvineyard.h -> include/topology, examples/grid -> examples/pl-functions
Sun, 20 Dec 2009 08:27:01 -0800 Merged Vineyards code changes with the main development line dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 20 Dec 2009 08:27:01 -0800] rev 182
Merged Vineyards code changes with the main development line
Sun, 20 Dec 2009 07:45:29 -0800 Python bindings work again dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 20 Dec 2009 07:45:29 -0800] rev 181
Python bindings work again
Wed, 16 Dec 2009 15:39:38 -0800 Created pl-vineyard.cpp to compute vineyards given a complex and a sequence of values at each vertex dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 16 Dec 2009 15:39:38 -0800] rev 180
Created pl-vineyard.cpp to compute vineyards given a complex and a sequence of values at each vertex
Wed, 16 Dec 2009 15:39:06 -0800 Resurrected vineyard code: dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 16 Dec 2009 15:39:06 -0800] rev 179
Resurrected vineyard code: * Switched StaticPersistence + (serializable) Filtration to Boost.MultiIndex * Updated DynamicPersistenceTrails to work with the new MultiIndex way * Created LSVineyard class, and fixed the grid examples
Thu, 03 Dec 2009 13:21:23 -0800 Made storing negative simplices in StaticPersistence parameter-based, so that DynamicPersistence works again dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 03 Dec 2009 13:21:23 -0800] rev 178
Made storing negative simplices in StaticPersistence parameter-based, so that DynamicPersistence works again
Wed, 02 Dec 2009 14:03:54 -0800 StaticPersistence operates on chains consisting of only positive simplices dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 02 Dec 2009 14:03:54 -0800] rev 177
StaticPersistence operates on chains consisting of only positive simplices
Tue, 01 Dec 2009 20:34:31 -0800 alphashapes3d.cpp measures persistence time dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 01 Dec 2009 20:34:31 -0800] rev 176
alphashapes3d.cpp measures persistence time
Sat, 28 Nov 2009 17:01:52 -0800 Fixed DynamicPersistenceTrails::PairingTrailsVisitor to match the changes in StaticPersistence::PairVisitor dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 28 Nov 2009 17:01:52 -0800] rev 175
Fixed DynamicPersistenceTrails::PairingTrailsVisitor to match the changes in StaticPersistence::PairVisitor
Sat, 28 Nov 2009 16:45:42 -0800 Instrumented code for counting: dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 28 Nov 2009 16:45:42 -0800] rev 174
Instrumented code for counting: * added counters to addition in cohomology and ChainWrapper * rips-pairwise-cohomology counts the maximum elements stored in the cycles * added alphashapes3d-cohomology * moved progress_display from DynamicPersistence to StaticPersistence
Fri, 06 Nov 2009 14:19:08 -0800 Added arbitrary coefficients in boundaries (to C++ and Python) + cleaned up CohomologyPersistence.add overloading in Python dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 06 Nov 2009 14:19:08 -0800] rev 173
Added arbitrary coefficients in boundaries (to C++ and Python) + cleaned up CohomologyPersistence.add overloading in Python
Wed, 28 Oct 2009 14:38:36 -0700 Added image persistence functionality to CohomologyPersistence dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 28 Oct 2009 14:38:36 -0700] rev 172
Added image persistence functionality to CohomologyPersistence
Fri, 23 Oct 2009 11:51:23 -0700 Added draw.py under tools/draw-diagram dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 23 Oct 2009 11:51:23 -0700] rev 171
Added draw.py under tools/draw-diagram
Fri, 23 Oct 2009 09:36:55 -0700 Added link to CVXOPT in get-build-install documentation + progress bar to rips-pairwise-cohomology dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 23 Oct 2009 09:36:55 -0700] rev 170
Added link to CVXOPT in get-build-install documentation + progress bar to rips-pairwise-cohomology
Tue, 20 Oct 2009 22:05:23 -0700 Fixed a typo in documentation + added a warning and a tip about GCC 4.2 on a Mac dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 20 Oct 2009 22:05:23 -0700] rev 169
Fixed a typo in documentation + added a warning and a tip about GCC 4.2 on a Mac
Mon, 31 Aug 2009 13:45:28 -0700 The if-else cases in lsqr.py were not exhaustive. They become exhaustive by changing ab > aa to ab >= aa. dev
mridul@ramrod.Stanford.EDU [Mon, 31 Aug 2009 13:45:28 -0700] rev 168
The if-else cases in lsqr.py were not exhaustive. They become exhaustive by changing ab > aa to ab >= aa.
Mon, 31 Aug 2009 10:51:56 -0700 Removed Qt4 requirement + added link to download and tutorial to the front page of the documentation dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 31 Aug 2009 10:51:56 -0700] rev 167
Removed Qt4 requirement + added link to download and tutorial to the front page of the documentation
Fri, 21 Aug 2009 14:26:56 -0700 Exposed store argument to CohomologyPersistence.add() in Python dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 21 Aug 2009 14:26:56 -0700] rev 166
Exposed store argument to CohomologyPersistence.add() in Python
Wed, 19 Aug 2009 12:01:47 -0700 cocycle.py uses vertex list, and does not make any assumptions about the vertex-simplex order dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 19 Aug 2009 12:01:47 -0700] rev 165
cocycle.py uses vertex list, and does not make any assumptions about the vertex-simplex order
Thu, 13 Aug 2009 13:16:15 -0700 Consistency zigzag outputs intervals supported over a single complex dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 13 Aug 2009 13:16:15 -0700] rev 164
Consistency zigzag outputs intervals supported over a single complex
Wed, 12 Aug 2009 21:32:38 -0700 explicitely converts a Dimension (short int) into a size_t, for removing a warning dev
Camille Wormser <camille.wormser@normalesup.org> [Wed, 12 Aug 2009 21:32:38 -0700] rev 163
explicitely converts a Dimension (short int) into a size_t, for removing a warning
Wed, 12 Aug 2009 07:16:35 -0700 Removing unused parameter names in order to avoid warnings dev
Camille Wormser <camille.wormser@normalesup.org> [Wed, 12 Aug 2009 07:16:35 -0700] rev 162
Removing unused parameter names in order to avoid warnings -> no warning anymore in zigzag-persistence
Wed, 12 Aug 2009 11:32:42 -0700 make-zigzag-subsamples.py doesn't output the union, rips-consistency-zigzag.cpp fixed show_progress dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 12 Aug 2009 11:32:42 -0700] rev 161
make-zigzag-subsamples.py doesn't output the union, rips-consistency-zigzag.cpp fixed show_progress
Mon, 10 Aug 2009 16:48:13 -0700 Fixed bugs in cocycle.py introduced when rips-pairwise-cohomology.py was originally added dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 10 Aug 2009 16:48:13 -0700] rev 160
Fixed bugs in cocycle.py introduced when rips-pairwise-cohomology.py was originally added
Mon, 10 Aug 2009 15:22:32 -0700 Fixed bugs in rips-pairwise-cohomology.py whose origin is unclear to me dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 10 Aug 2009 15:22:32 -0700] rev 159
Fixed bugs in rips-pairwise-cohomology.py whose origin is unclear to me
Tue, 04 Aug 2009 17:12:47 -0700 Merged in Chris' changes dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 04 Aug 2009 17:12:47 -0700] rev 158
Merged in Chris' changes
Tue, 04 Aug 2009 16:58:44 -0700 Modified cohomology code (unweighted and weighted) so that it doesn't use std::map for boundary computations, which should optimize memory usage. dev
Christos Mantoulidis <cmad@stanford.edu> [Tue, 04 Aug 2009 16:58:44 -0700] rev 157
Modified cohomology code (unweighted and weighted) so that it doesn't use std::map for boundary computations, which should optimize memory usage.
Tue, 04 Aug 2009 13:23:16 -0700 Changed implementation of WeightedRips to store simplex values (max distance between simplices' vertices) as an invisible layer on top of each simplex object, so that the data() field of WeightedRips has been freed for use by the users again. dev
Christos Mantoulidis <cmad@stanford.edu> [Tue, 04 Aug 2009 13:23:16 -0700] rev 156
Changed implementation of WeightedRips to store simplex values (max distance between simplices' vertices) as an invisible layer on top of each simplex object, so that the data() field of WeightedRips has been freed for use by the users again.
Tue, 28 Jul 2009 15:04:06 -0700 Added rips-weighted-cohomology, and channeled WeightedRips logging to the same channel as Rips dev
Christos Mantoulidis <cmad@stanford.edu> [Tue, 28 Jul 2009 15:04:06 -0700] rev 155
Added rips-weighted-cohomology, and channeled WeightedRips logging to the same channel as Rips
Tue, 28 Jul 2009 11:42:03 -0700 Merged upstream dev
Christos Mantoulidis <cmad@stanford.edu> [Tue, 28 Jul 2009 11:42:03 -0700] rev 154
Merged upstream
Tue, 28 Jul 2009 10:58:53 -0700 Modified WeightedRips::generate() to incorporate the simplex-appearance-value computation (before it would have to be done explicitly by the user by a for-loop after the call to generate()) dev
Christos Mantoulidis <cmad@stanford.edu> [Tue, 28 Jul 2009 10:58:53 -0700] rev 153
Modified WeightedRips::generate() to incorporate the simplex-appearance-value computation (before it would have to be done explicitly by the user by a for-loop after the call to generate())
Mon, 27 Jul 2009 21:42:51 -0700 added logging to WeightedRips (still needs debugging) dev
Christos Mantoulidis <cmad@stanford.edu> [Mon, 27 Jul 2009 21:42:51 -0700] rev 152
added logging to WeightedRips (still needs debugging)
Mon, 13 Jul 2009 19:44:04 -0700 Updated weighted rips libraries to make use of OOP--now WeightedRips inherits from Rips. It is possible that logging for WeightedRips does not work. dev
Christos Mantoulidis <cmad@stanford.edu> [Mon, 13 Jul 2009 19:44:04 -0700] rev 151
Updated weighted rips libraries to make use of OOP--now WeightedRips inherits from Rips. It is possible that logging for WeightedRips does not work.
Thu, 02 Jul 2009 15:42:44 -0700 Added weighted rips code and libraries dev
Christos Mantoulidis <cmad@stanford.edu> [Thu, 02 Jul 2009 15:42:44 -0700] rev 150
Added weighted rips code and libraries
Tue, 04 Aug 2009 14:28:17 -0700 Simplices are deleted from the complex after removal in triangle-zigzag.py + touched up documentation (to mention CohomologyPersistence better) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 04 Aug 2009 14:28:17 -0700] rev 149
Simplices are deleted from the complex after removal in triangle-zigzag.py + touched up documentation (to mention CohomologyPersistence better)
Tue, 28 Jul 2009 13:27:13 -0700 Consistency zigzag outputs intervals for dimensions less than the skeleton dimension only dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 28 Jul 2009 13:27:13 -0700] rev 148
Consistency zigzag outputs intervals for dimensions less than the skeleton dimension only
Thu, 30 Jul 2009 10:35:49 -0700 Switched PairwiseDistances in Python bindings to C++ dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 30 Jul 2009 10:35:49 -0700] rev 147
Switched PairwiseDistances in Python bindings to C++
Thu, 30 Jul 2009 10:23:31 -0700 Added Python bindings for CohomologyPersistence (+ example + documentation) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 30 Jul 2009 10:23:31 -0700] rev 146
Added Python bindings for CohomologyPersistence (+ example + documentation)
Fri, 24 Jul 2009 14:18:16 -0700 Minor changes in distances.py + rips-pairwise.py wrapped into a main() function dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 24 Jul 2009 14:18:16 -0700] rev 145
Minor changes in distances.py + rips-pairwise.py wrapped into a main() function
Wed, 17 Jun 2009 16:02:52 -0700 Disable alphashapes in Python bindings if no CGAL dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 17 Jun 2009 16:02:52 -0700] rev 144
Disable alphashapes in Python bindings if no CGAL
Sun, 17 May 2009 20:05:26 -0700 Made ListRandomAccessIterator generic with respect to value, and moved it to utils.h dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 17 May 2009 20:05:26 -0700] rev 143
Made ListRandomAccessIterator generic with respect to value, and moved it to utils.h
Fri, 24 Jul 2009 11:08:48 -0700 Cleaner output in rips-pairwise.cpp + added make-zigzag-subsamples.py + added lsfiltration.py dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 24 Jul 2009 11:08:48 -0700] rev 142
Cleaner output in rips-pairwise.cpp + added make-zigzag-subsamples.py + added lsfiltration.py
Thu, 09 Jul 2009 07:47:22 -0700 Fixed plot.py in tools/plot-values dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Jul 2009 07:47:22 -0700] rev 141
Fixed plot.py in tools/plot-values
Thu, 14 May 2009 17:43:19 -0700 In documentation put contents into sidebar dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 14 May 2009 17:43:19 -0700] rev 140
In documentation put contents into sidebar
Thu, 09 Jul 2009 02:46:53 -0700 Documentation for parametrization using persistent cohomology dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Jul 2009 02:46:53 -0700] rev 139
Documentation for parametrization using persistent cohomology
Thu, 09 Jul 2009 02:42:47 -0700 Rips pairwise cohomology produces output necessary for 1-cocycle parametrization dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Jul 2009 02:42:47 -0700] rev 138
Rips pairwise cohomology produces output necessary for 1-cocycle parametrization
Thu, 09 Jul 2009 00:59:32 -0700 Added field arithmetic to CohomologyPersistence (Zp + Q) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Jul 2009 00:59:32 -0700] rev 137
Added field arithmetic to CohomologyPersistence (Zp + Q)
Thu, 14 May 2009 14:04:43 -0700 Moved PairwiseDistances and ExplicitDistances into include/geometry/distances.h dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 14 May 2009 14:04:43 -0700] rev 136
Moved PairwiseDistances and ExplicitDistances into include/geometry/distances.h
Thu, 14 May 2009 13:09:06 -0700 read_points() does not need ambient dimension and ignores lines starting with '#' dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 14 May 2009 13:09:06 -0700] rev 135
read_points() does not need ambient dimension and ignores lines starting with '#'
Mon, 11 May 2009 12:45:49 -0700 Added documentation; for now mostly for the Python bindings dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 11 May 2009 12:45:49 -0700] rev 134
Added documentation; for now mostly for the Python bindings
Thu, 07 May 2009 14:53:13 -0700 Touch up to compile with GCC 4.4 dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 May 2009 14:53:13 -0700] rev 133
Touch up to compile with GCC 4.4
Wed, 29 Apr 2009 10:16:03 -0700 Cleaned up simplex comparison functions, rip-pairwise.py outputs a diagram, auxilliary add_simplices() + remove_simplices() for zigzags dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 29 Apr 2009 10:16:03 -0700] rev 132
Cleaned up simplex comparison functions, rip-pairwise.py outputs a diagram, auxilliary add_simplices() + remove_simplices() for zigzags
Thu, 16 Apr 2009 00:23:01 -0700 Alphashapes and Python bindings dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 16 Apr 2009 00:23:01 -0700] rev 131
Alphashapes and Python bindings * converted alphashapes2d to the new format * added Python bindings for alphashapes * added sample alphashapes.py that dynamically distinguishes between 2D and 3D
Wed, 15 Apr 2009 14:17:21 -0700 Placed all Python bindings code into dionysus::python namespace dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 15 Apr 2009 14:17:21 -0700] rev 130
Placed all Python bindings code into dionysus::python namespace
Tue, 14 Apr 2009 14:38:08 -0700 Cleaned up Python bindings to restore functionality: dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 14 Apr 2009 14:38:08 -0700] rev 129
Cleaned up Python bindings to restore functionality: * StaticPersistence is iterable, its nodes are usable (sign, pair, cycle) * StaticPersistence knows how to map its nodes into Filtration indices * moved PythonCmp into utils.h * minor cosmetic changes
Mon, 13 Apr 2009 20:44:31 -0700 Renamed header files in bindings/python to get rid of the "python-" prefix dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 13 Apr 2009 20:44:31 -0700] rev 128
Renamed header files in bindings/python to get rid of the "python-" prefix
Mon, 13 Apr 2009 20:38:46 -0700 Changes in Python Bindings: dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 13 Apr 2009 20:38:46 -0700] rev 127
Changes in Python Bindings: * the exposed C++ simplex has Empty data * Python Simplex constructor with data as well as data-based comparison functions are implemented in pure Python
Sat, 11 Apr 2009 10:29:53 -0700 Added Python bindings for the Rips complex + an example dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 11 Apr 2009 10:29:53 -0700] rev 126
Added Python bindings for the Rips complex + an example
Fri, 01 May 2009 15:09:38 -0700 Cleaned up traits (chain and container) for static- and dynamic-persistence dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 01 May 2009 15:09:38 -0700] rev 125
Cleaned up traits (chain and container) for static- and dynamic-persistence
Fri, 01 May 2009 15:36:25 -0700 Added tools/extract-diagram + minor fixes dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 01 May 2009 15:36:25 -0700] rev 124
Added tools/extract-diagram + minor fixes
Fri, 10 Apr 2009 14:35:43 -0700 Added intrusive containers issue and issue filters dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 10 Apr 2009 14:35:43 -0700] rev 123
Added intrusive containers issue and issue filters
Thu, 09 Apr 2009 14:43:37 -0700 Moved l2distance.h into include/geometry dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Apr 2009 14:43:37 -0700] rev 122
Moved l2distance.h into include/geometry
Thu, 09 Apr 2009 14:39:12 -0700 Added categories to some of the issues dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Apr 2009 14:39:12 -0700] rev 121
Added categories to some of the issues
Thu, 09 Apr 2009 12:58:10 -0700 Fixed distance to diagonal calculation + added stand-alone bottleneck distance tool dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Apr 2009 12:58:10 -0700] rev 120
Fixed distance to diagonal calculation + added stand-alone bottleneck distance tool
Wed, 25 Mar 2009 09:56:52 -0700 Added ZigzagPersistence::is_alive() + consistency zigzag outputs betti 1 at each stage dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 25 Mar 2009 09:56:52 -0700] rev 119
Added ZigzagPersistence::is_alive() + consistency zigzag outputs betti 1 at each stage
Tue, 24 Mar 2009 15:17:39 -0700 Added consistency zigzag dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 24 Mar 2009 15:17:39 -0700] rev 118
Added consistency zigzag
Mon, 23 Mar 2009 11:40:29 -0700 Merged in cohomology branch dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 23 Mar 2009 11:40:29 -0700] rev 117
Merged in cohomology branch
Fri, 27 Feb 2009 10:14:26 -0800 Added CohomologyPersistence and Rips pairwise distances computation dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 27 Feb 2009 10:14:26 -0800] rev 116
Added CohomologyPersistence and Rips pairwise distances computation
Sun, 22 Mar 2009 11:18:07 -0700 Added DynamicPersistenceChains (no dynamic part yet) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 22 Mar 2009 11:18:07 -0700] rev 115
Added DynamicPersistenceChains (no dynamic part yet)
Tue, 03 Feb 2009 11:31:10 -0800 Updated Rips zigzags dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 03 Feb 2009 11:31:10 -0800] rev 114
Updated Rips zigzags * Updated to use Bron-Kerbosch * Compute in the order of increasing epsilon, and decreasing point sizes * Split into plain zigzag (rips-zigzag) and image zigzag (rips-image-zigzag) * Added minor enhancements (show_progress and timers)
Sat, 31 Jan 2009 23:02:22 -0800 Switched Rips complex computation to Bron-Kerbosch algorithm dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 31 Jan 2009 23:02:22 -0800] rev 113
Switched Rips complex computation to Bron-Kerbosch algorithm
Thu, 29 Jan 2009 10:16:56 -0800 Added python bindings for ZigzagPersistence (as well as ImageZigzagPersistence) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 29 Jan 2009 10:16:56 -0800] rev 112
Added python bindings for ZigzagPersistence (as well as ImageZigzagPersistence)
Wed, 28 Jan 2009 14:57:17 -0800 Switched to CGAL 3.4 (native CMake configuration): for now only alphashapes dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 28 Jan 2009 14:57:17 -0800] rev 111
Switched to CGAL 3.4 (native CMake configuration): for now only alphashapes
Tue, 20 Jan 2009 10:53:35 -0800 Implemented ImageZigzagPersistence dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 20 Jan 2009 10:53:35 -0800] rev 110
Implemented ImageZigzagPersistence * Changed ZigzagPersistence to support a visitor, and implemented ImageZigzagPersistence * examples/rips/rips-zigzag now computes using ImageZigzagPersistence * PersistenceDiagram no longer records zero persistence pairs * Added utilities/memory.h with report_memory() function
Mon, 12 Jan 2009 15:33:04 -0800 Debugged ZigzagPersistence (having added heavier consistency checking) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 12 Jan 2009 15:33:04 -0800] rev 109
Debugged ZigzagPersistence (having added heavier consistency checking) * Added DEBUG_CONTAINERS option (uses std::__debug::* containers for chains and in ZigzagPersistence) * Added SizeStorage specialization for std::deque<T> * ZigzagPersistence got a lot more consistency checking (in debug mode only, which now crawls); as a result it's been debugged (running on non-trivial examples) * examples/rips/rips-zigzag takes command-line options * added ChainWrapper::clear() * added Simplex::VertexDimensionComparison * added PairwiseDistances class (for computing distances between points in a container according to a distance functor)
Fri, 02 Jan 2009 14:54:15 -0800 Added rips-zigzag; in the process caught a number of bugs in ZigzagPersistence (added check_consistency() to it) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 02 Jan 2009 14:54:15 -0800] rev 108
Added rips-zigzag; in the process caught a number of bugs in ZigzagPersistence (added check_consistency() to it)
Wed, 31 Dec 2008 11:54:34 -0800 Added DequeChains (for ZigzagPersistence) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 31 Dec 2008 11:54:34 -0800] rev 107
Added DequeChains (for ZigzagPersistence)
Wed, 31 Dec 2008 11:51:14 -0800 Added ZigzagPersistence dev
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 31 Dec 2008 11:51:14 -0800] rev 106
Added ZigzagPersistence
Sat, 27 Dec 2008 14:51:38 -0800 Merged in Python branch dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 27 Dec 2008 14:51:38 -0800] rev 105
Merged in Python branch
Thu, 25 Dec 2008 13:09:00 -0800 Initial commit of Python bindings dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 25 Dec 2008 13:09:00 -0800] rev 104
Initial commit of Python bindings
Thu, 25 Dec 2008 13:08:41 -0800 Empty is now a template, replaced RecursiveIterator with boost::counting_iterator dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 25 Dec 2008 13:08:41 -0800] rev 103
Empty is now a template, replaced RecursiveIterator with boost::counting_iterator
Tue, 23 Dec 2008 15:10:15 -0800 Removed boundary() from AlphaSimplex3D dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 23 Dec 2008 15:10:15 -0800] rev 102
Removed boundary() from AlphaSimplex3D
Tue, 23 Dec 2008 11:40:38 -0800 Changed Simplex::boundary() to be iterator-based (replaced it with boundary_begin() and boundary_end()) dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 23 Dec 2008 11:40:38 -0800] rev 101
Changed Simplex::boundary() to be iterator-based (replaced it with boundary_begin() and boundary_end())
Sat, 27 Dec 2008 14:33:25 -0800 Commit before merging in Python branch: dev
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 27 Dec 2008 14:33:25 -0800] rev 100
Commit before merging in Python branch: * converted more examples: poincare, rips, some fitness * two generators for Rips complexes * ChainWrapper uses stl algorithms for everything, added CountingBackInserter and switched SizeStorage to use operators * retabbing files along the way * added #957a (namespace dionysus)
Thu, 25 Dec 2008 14:24:02 -0800 Initial addition of tools/diagram-viewer dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 25 Dec 2008 14:24:02 -0800] rev 99
Initial addition of tools/diagram-viewer
Tue, 23 Dec 2008 11:02:08 -0800 Closed #8a1 and #96b, added #de6 and #f64 dev
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 23 Dec 2008 11:02:08 -0800] rev 98
Closed #8a1 and #96b, added #de6 and #f64
Thu, 18 Dec 2008 16:43:42 -0800 Intermediate commit while converting to the new architecture dev
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 18 Dec 2008 16:43:42 -0800] rev 97
Intermediate commit while converting to the new architecture * Converted Filtration into StaticPersistence and DynamicPersistenceTrails (both right now work with the underlying std::vector rather than std::list order) * Filtration is now just an auxilliary glue (a map between Complex and Persistence) * Whether chains are vectors or lists can be interchanged * Added PersistenceDiagram with a simple bottleneck_distance() function * Converted triangle, alphashapes3d, and cech-complex examples * Lots of organizational changes (factoring utilities out into containers.h, indirect.h, property-maps.h) * Trying to document along the way with NaturalDocs-type comments
Mon, 22 Sep 2008 21:53:25 -0700 Switching README to PanDoc dev
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 22 Sep 2008 21:53:25 -0700] rev 96
Switching README to PanDoc
Mon, 22 Sep 2008 21:53:16 -0700 Added Rips complex-based distance computation to fitness dev
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 22 Sep 2008 21:53:16 -0700] rev 95
Added Rips complex-based distance computation to fitness
Mon, 22 Sep 2008 21:49:22 -0700 Added ExplicitDistance + Evaluator to Rips complexes dev
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 22 Sep 2008 21:49:22 -0700] rev 94
Added ExplicitDistance + Evaluator to Rips complexes
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