Intermediate commit while converting to the new architecture * Converted Filtration into StaticPersistence and DynamicPersistenceTrails (both right now work with the underlying std::vector rather than std::list order) * Filtration is now just an auxilliary glue (a map between Complex and Persistence) * Whether chains are vectors or lists can be interchanged * Added PersistenceDiagram with a simple bottleneck_distance() function * Converted triangle, alphashapes3d, and cech-complex examples * Lots of organizational changes (factoring utilities out into containers.h, indirect.h, property-maps.h) * Trying to document along the way with NaturalDocs-type comments

From: Dmitriy Morozov <morozov@cs.duke.edu>
Date: Thu, 28 Feb 2008 05:33:34 -0500
State: fixed
Subject: Two simulators
Message-Id: <c664b2f69b5f6ea3-0-artemis@metatron>

Consider using two simulators instead of one to make sure that trajectory
changes are processed before simplex swaps.