Intermediate commit while converting to the new architecture * Converted Filtration into StaticPersistence and DynamicPersistenceTrails (both right now work with the underlying std::vector rather than std::list order) * Filtration is now just an auxilliary glue (a map between Complex and Persistence) * Whether chains are vectors or lists can be interchanged * Added PersistenceDiagram with a simple bottleneck_distance() function * Converted triangle, alphashapes3d, and cech-complex examples * Lots of organizational changes (factoring utilities out into containers.h, indirect.h, property-maps.h) * Trying to document along the way with NaturalDocs-type comments

template<class S>
typename ConeSimplex<S>::Cycle
ConeSimplex<S>::boundary() const
{
	Cycle bdry;
	typename Parent::Cycle pbdry = Parent::boundary();

	for (typename Parent::Cycle::const_iterator cur = pbdry.begin(); cur != pbdry.end(); ++cur)
		bdry.push_back(Self(*cur, coned_));
	
	if (coned_)
		bdry.push_back(Self(*this, false));
	
	return bdry;
}

template<class S>
std::ostream&
ConeSimplex<S>::operator<<(std::ostream& out) const
{
	Parent::operator<<(out) << ' ';
	if (coned_) out << "[coned]";
	return out;
}