Intermediate commit while converting to the new architecture * Converted Filtration into StaticPersistence and DynamicPersistenceTrails (both right now work with the underlying std::vector rather than std::list order) * Filtration is now just an auxilliary glue (a map between Complex and Persistence) * Whether chains are vectors or lists can be interchanged * Added PersistenceDiagram with a simple bottleneck_distance() function * Converted triangle, alphashapes3d, and cech-complex examples * Lots of organizational changes (factoring utilities out into containers.h, indirect.h, property-maps.h) * Trying to document along the way with NaturalDocs-type comments

Write an audit for the data structure.

-DBOOST_UBLAS_TYPE_CHECK=0 is necessary since otherwise Boost's uBLAS gives a compile-time error 
when it doesn't find sqrt for polynomials. It doesn't actually need it (e.g., for LU-decomposition, 
but it looks for it during type check). (File a bug report with Boost?)