+
−Dependencies
+
−  CGAL-3.3 -    for alpha-shapes and kinetic data structures
+
−  DSR-PDB -     for reading in PDB files
+
−  cmake -       for controlling the build process
+
−  boost -       great set of C++ libraries
+
−  Doxygen -     for building documentation
+
−  libcwd -      for debugging only (is not needed by default)
+
−  synaps -      for solving polynomial (for kinetic kernel), which in turn requires GMP
+
−
+
−Configuration
+
−  The path to CGAL's Makefile is expected to be set in $CGAL_MAKEFILE, the rest
+
−  is just usual CMake configuration
+
−
+
−Building
+
−  To build examples, create a directory build (to keep everything in one place),
+
−  go to that directory and run cmake and make:
+
−  mkdir build
+
−  cd build
+
−  cmake ..   (or "ccmake .." if you want a curses interface)
+
−  make
+
−  
+
−  In the cmake line you can provide -Ddebug:bool=on to turn on debugging,
+
−  -Dcounters:bool=on to turn on counters, -Doptimize:int=3 would set
+
−  optimization to -O3. All of this can be set using a text user interface by
+
−  running ccmake instead of cmake.
+
−
+
−Author
+
−  Dmitriy Morozov <morozov@cs.duke.edu>