Fixed bugs in diagram.py and adaptor.py + added coloring of points in show_complex_2D(); Filtration can be initialized from iterator without comparison
from PyQt4 import QtGui, QtCore
from dionysus import Simplex
class ComplexViewer(QtGui.QGraphicsView):
def __init__(self, points, complex = None, values = None):
super(QtGui.QGraphicsView, self).__init__()
self.points = points
if complex:
self.complex = [s for s in complex]
else:
# Create vertex simplices if no complex provided
self.complex = [Simplex([i]) for i in xrange(len(self.points))]
if not values:
values = [0]*len(self.points)
self.maxval, self.minval = max(values), min(values)
self.setRenderHint(QtGui.QPainter.Antialiasing)
self.scene = QtGui.QGraphicsScene(self)
self.setScene(self.scene)
minx = min(p[0] for p in points)
miny = min(p[1] for p in points)
maxx = max(p[0] for p in points)
maxy = max(p[1] for p in points)
radius = min(maxx - minx, maxy - miny)/100
self.scene.setSceneRect(minx - 10*radius, miny - 10*radius, (maxx - minx) + 20*radius, (maxy - miny) + 20*radius)
self.complex.sort(lambda s1, s2: -cmp(s1.dimension(), s2.dimension()))
for s in self.complex:
vertices = [v for v in s.vertices]
if s.dimension() == 0: # point
p = points[vertices[0]]
v = values[vertices[0]]
item = QtGui.QGraphicsEllipseItem(p[0] - radius/2,p[1] - radius/2,radius,radius)
color = self.colormap(v)
item.setBrush(QtGui.QBrush(color))
item.setPen(QtGui.QPen(color))
elif s.dimension() == 1: # edge
p0 = points[vertices[0]]
p1 = points[vertices[1]]
item = QtGui.QGraphicsLineItem(p0[0], p0[1], p1[0], p1[1])
else: # higher-d simplex
pts = [QtCore.QPointF(points[v][0], points[v][1]) for v in vertices]
item = QtGui.QGraphicsPolygonItem(QtGui.QPolygonF(pts))
item.setBrush(QtCore.Qt.blue)
self.scene.addItem(item)
# Flip y-axis
self.scale(1,-1)
# Set the correct view
rect = self.scene.itemsBoundingRect()
self.fitInView(rect, QtCore.Qt.KeepAspectRatio)
def colormap(self, v):
if self.maxval <= self.minval:
t = 0
else:
t = (v - self.minval)/(self.maxval - self.minval)
c = QtGui.QColor()
c.setHsv(int(t*255), 255, 255)
return c
# TODO: cycle
def show_complex_2D(points, complex = None, values = None):
app = QtGui.QApplication([])
view = ComplexViewer(points, complex, values)
view.show()
view.raise_()
app.exec_()