Added rips-zigzag; in the process caught a number of bugs in ZigzagPersistence (added check_consistency() to it)
#include <utilities/log.h>
#include "alphashapes2d.h"
#include <topology/filtration.h>
#include <iostream>
#include <fstream>
typedef Filtration<AlphaSimplex2D> AlphaFiltration;
int main(int argc, char** argv)
{
#ifdef LOGGING
rlog::RLogInit(argc, argv);
stdoutLog.subscribeTo( RLOG_CHANNEL("error") );
stdoutLog.subscribeTo( RLOG_CHANNEL("info") );
//stdoutLog.subscribeTo( RLOG_CHANNEL("topology/filtration") );
//stdoutLog.subscribeTo( RLOG_CHANNEL("topology/cycle") );
#endif
SetFrequency(GetCounter("filtration/pair"), 10000);
SetTrigger(GetCounter("filtration/pair"), GetCounter(""));
// Read in the point set and compute its Delaunay triangulation
std::istream& in = std::cin;
double x,y;
Delaunay Dt;
while(in)
{
in >> x >> y;
Point p(x,y);
Dt.insert(p);
}
rInfo("Delaunay triangulation computed");
AlphaSimplex2DVector alpha_ordering;
fill_alpha_order(Dt, alpha_ordering);
rInfo("Simplices: %i", alpha_ordering.size());
// Create the alpha-shape filtration
AlphaFiltration af;
for (AlphaSimplex2DVector::const_iterator cur = alpha_ordering.begin();
cur != alpha_ordering.end(); ++cur)
af.append(*cur);
af.fill_simplex_index_map();
rInfo("Filled simplex-index map");
af.pair_simplices(af.begin(), af.end(), false);
rInfo("Simplices paired");
for (AlphaFiltration::Index i = af.begin(); i != af.end(); ++i)
if (i->is_paired())
{
if (i->sign())
std::cout << i->dimension() << " " << i->value() << " " << i->pair()->value() << std::endl;
} //else std::cout << i->value() << std::endl;
}