Added code to expose the persistence_diagram class, the bottleneck_distance function and the point class to python.
Most of the commonly used methods for each class have been exported.
The constructor for point now requires that a data argument be provided along with x and y coord. This needs to be made optional.
The constructor for persistence_diagram could possibly be rewritten as well.
/**
* Author: Dmitriy Morozov
* Department of Computer Science, Duke University, 2007
*/
#ifndef __ARSIMPLEX3D_H__
#define __ARSIMPLEX3D_H__
#include <CGAL/Exact_predicates_exact_constructions_kernel.h>
#include <CGAL/Delaunay_triangulation_3.h>
//#include <CGAL/Kernel/global_functions_3.h> // FIXME: what do we include for circumcenter?
#include <CGAL/squared_distance_3.h>
#include <topology/simplex.h>
#include <utilities/types.h>
#include <vector>
#include <set>
#include <iostream>
struct K: CGAL::Exact_predicates_exact_constructions_kernel {};
typedef CGAL::Delaunay_triangulation_3<K> Delaunay;
typedef Delaunay::Point Point;
typedef Delaunay::Vertex Vertex;
typedef Delaunay::Vertex_handle Vertex_handle;
typedef Delaunay::Edge Edge;
typedef Delaunay::Facet Facet;
typedef Delaunay::Cell Cell;
typedef Delaunay::Cell_handle Cell_handle;
typedef Delaunay::Finite_vertices_iterator Vertex_iterator;
typedef Delaunay::Finite_edges_iterator Edge_iterator;
typedef Delaunay::Finite_facets_iterator Facet_iterator;
typedef Delaunay::Finite_cells_iterator Cell_iterator;
typedef Delaunay::Facet_circulator Facet_circulator;
class ARSimplex3D: public SimplexWithVertices<Vertex_handle>
{
public:
typedef K::FT RealValue;
typedef std::map<ARSimplex3D, RealValue> SimplexPhiMap;
typedef SimplexWithVertices<Vertex_handle> Parent;
typedef Parent::VertexContainer VertexSet;
typedef std::list<ARSimplex3D> Cycle;
public:
ARSimplex3D() {}
ARSimplex3D(const Parent& p):
Parent(p) {}
ARSimplex3D(const ARSimplex3D& s);
ARSimplex3D(const Parent::Vertex& v);
ARSimplex3D(const ::Vertex& v, const Point& z);
ARSimplex3D(const Edge& e);
ARSimplex3D(const Edge& e, const Point& z, SimplexPhiMap& simplices,
const Delaunay& Dt, Facet_circulator facet_bg);
ARSimplex3D(const Facet& f);
ARSimplex3D(const Facet& f, const Point& z, const SimplexPhiMap& simplices,
const Delaunay& Dt);
ARSimplex3D(const Cell& c, const Point& z);
RealType value() const { return CGAL::to_double(alpha_); }
RealValue alpha() const { return alpha_; }
RealValue phi_const() const { return phi_const_; }
RealValue rho() const { return rho_; }
RealValue s() const { return s_; }
RealValue v() const { return v_; }
bool attached() const { return attached_; }
Cycle boundary() const;
void set_phi_const(RealValue phi_const) { phi_const_ = phi_const; }
// Ordering
struct AlphaOrder
{ bool operator()(const ARSimplex3D& first, const ARSimplex3D& second) const; };
std::ostream& operator<<(std::ostream& out) const;
private:
RealValue alpha_; // alpha_ is the squared radius of the smallest _empty_ circumsphere
RealValue rho_; // rho_ is the squared radius of the smallest circumsphere
RealValue s_; // s_ is the squared distance from z to the affine hull of the simplex
RealValue v_; // v_ is the squared distance from z to the affine hull of the dual Voronoi cell
RealValue phi_const_; // see LHI paper, Appendices A and B
bool attached_;
// in paper's notation: s_ = v^2; v_ = d^2
};
typedef std::vector<ARSimplex3D> ARSimplex3DVector;
void update_simplex_phi_map(const ARSimplex3D& s, ARSimplex3D::SimplexPhiMap& simplices);
void fill_alpha_order(const Delaunay& Dt, const Point& z, ARSimplex3DVector& alpha_order);
std::ostream& operator<<(std::ostream& out, const ARSimplex3D& s) { return s.operator<<(out); }
#include "ar-simplex3d.hpp"
#endif // __ARSIMPLEX3D_H__