Added code to expose the persistence_diagram class, the bottleneck_distance function and the point class to python.
Most of the commonly used methods for each class have been exported.
The constructor for point now requires that a data argument be provided along with x and y coord. This needs to be made optional.
The constructor for persistence_diagram could possibly be rewritten as well.
#!/usr/bin/env python
import pd
from sys import argv, exit
if len(argv) < 2:
print "Usage: %s FILENAME [MULTIPLIER=1] [NOISE=0] [RADIUS=.15] [DIMENSIONS=XMIN,YMIN,XMAX,YMAX]" % argv[0]
print " MULTIPLIER - multiply coordinates of each point by this quantity"
print " NOISE - filter out points below this persistence"
print " RADIUS - radius of a point in the persistence diagram"
print " DIMENSIONS - dimensions of the persistence diagram"
print
print " Example: %s torus.dgm 1 0 .05 -1,-1,10,10" % argv[0]
exit()
multiplier = float(argv[2]) if len(argv) > 2 else 1
noise = float(argv[3]) if len(argv) > 3 else 0
R = float(argv[4]) if len(argv) > 4 else .15
dimensions = map(float, argv[5].split(',')) if len(argv) > 5 else None
noise_filter = pd.noise_filter(noise)
amplify_filter = pd.amplify_filter(multiplier)
dgm = pd.PersistenceDiagram(argv[1], lambda x,y: noise_filter(x,y) and amplify_filter(x,y))
dgm.savePDF(argv[1] + '.', radius = R, dimensions = dimensions)