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−Dependencies
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−  CGAL-3.2 -    for alpha-shapes and kinetic data structures
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−  DSR-PDB -     for reading in PDB files
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−  cmake -       for controlling the build process
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−  boost -       great set of C++ libraries
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−  Doxygen -     for building documentation
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−  libcwd -      for debugging only (is not needed by default)
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−
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−Configuration
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−  The path to CGAL's Makefile is expected to be set in $CGAL_MAKEFILE, the rest
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−  is just usual CMake configuration
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−
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−Building
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−  To build examples, create a directory build (to keep everything in one place),
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−  go to that directory and run cmake and make:
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−  mkdir build
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−  cd build
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−  cmake ..   (or "ccmake .." if you want a curses interface)
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−  make
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−  
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−  In the cmake line you can provide -Ddebug:bool=on to turn on debugging,
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−  -Dcounters:bool=on to turn on counters, -Doptimize:int=3 would set
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−  optimization to -O3. All of this can be set using a text user interface by
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−  running ccmake instead of cmake.
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−
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−Author
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−  Dmitriy Morozov <morozov@cs.duke.edu>