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Switching README to PanDoc
dev
2008-09-22, by Dmitriy Morozov
Added Rips complex-based distance computation to fitness
dev
2008-09-22, by Dmitriy Morozov
Added ExplicitDistance + Evaluator to Rips complexes
dev
2008-09-22, by Dmitriy Morozov
Merged in Rips complexes
dev
2008-09-15, by Dmitriy Morozov
Added initial code for Rips complexes
dev
2008-09-15, by Dmitriy Morozov
Added join() operation for a Simplex
dev
2008-09-15, by Dmitriy Morozov
Removed inclusion of seemingly unnecessary boost/serialization/is_abstract.hpp header
dev
2008-09-15, by Dmitriy Morozov
Converted issues to Maildir format, added Boost 1.36 issue
dev
2008-09-09, by Dmitriy Morozov
Added cmake_minimum_required for compatibility with CMake 2.6
dev
2008-09-03, by Dmitriy Morozov
Merge in AR branch
dev
2008-04-04, by Dmitriy Morozov
Fixed #c42 for ar-vineyard
ar
2008-03-19, by Dmitriy Morozov
Merged in upstream changes and reopened #c42
ar
2008-03-19, by Dmitriy Morozov
KineticEvaluator takes the maximum time between the two simulators
ar
2008-03-02, by Dmitriy Morozov
Small logging additions + maintain_lazy = false + eventqueue
ar
2008-03-02, by Dmitriy Morozov
Marked #c66 and #d2a as fixed (fixes in f236c7d659d0 and abba2950aced, respectively)
ar
2008-03-01, by Dmitriy Morozov
Fixed Vineyard to preserve the vine addresses after we add a new dimension vine (was a major bug)
ar
2008-02-29, by Dmitriy Morozov
Using two simulators in ARVineyard (one for simplices and one for trajectories)
ar
2008-02-29, by Dmitriy Morozov
ConeSimplex and ARConeSimplex3D adjusted to work correctly with operator<(), operator==(), and boundary()
ar
2008-02-29, by Dmitriy Morozov
ConeSimplex correctly reports dimension()
ar
2008-02-27, by Dmitriy Morozov
program_options + trajectory knees
ar
2008-02-27, by Dmitriy Morozov
Merged upstream changes (to get boost::program_options setup in CMake)
ar
2008-02-27, by Dmitriy Morozov
Merged in fitness branch
dev
2008-02-25, by Dmitriy Morozov
ar-vinyeard compiles and runs:
ar
2008-02-27, by Dmitriy Morozov
Added intostring() issue (#89a)
ar
2008-02-26, by Dmitriy Morozov
KineticSort can deal with equal trajectories:
ar
2008-02-26, by Dmitriy Morozov
Fixed UPolynomial<T>::sign_at_negative_infinity() + Simulator::add()
ar
2008-02-26, by Dmitriy Morozov
Added and fixed CGAL debugging problem (issue #c42)
ar
2008-02-26, by Dmitriy Morozov
Added EventQueue efficiency issue (#ebd)
ar
2008-02-25, by Dmitriy Morozov
Initial commit of KineticSort-based ARVineyard
ar
2008-02-25, by Dmitriy Morozov
Issue #cd7: incorrect UPolynomial<double>::sign_at()
ar
2008-02-25, by Dmitriy Morozov
Fixed Simulator not processing events correctly
ar
2008-02-22, by Dmitriy Morozov
Fixed segfault in test-kinetic-sort (#b5d)
ar
2008-02-22, by Dmitriy Morozov
Added segfault in test-kinetic-sort issue
ar
2008-02-21, by Dmitriy Morozov
Changed PolynomialKernel to FunctionKernel
ar
2008-02-21, by Dmitriy Morozov
Changed geometry to RLog-based logging and counters
ar
2008-02-19, by Dmitriy Morozov
Added class groups to Doxygen documentation
ar
2008-02-19, by Dmitriy Morozov
Merged in changes from master
ar
2008-02-19, by Dmitriy Morozov
Commit to merge in changes from master.
ar
2008-02-19, by Dmitriy Morozov
Fixed handling of degeneracies in KineticSort, Simulator is aware of the sign of the RationalFunction
2007-08-24, by Dmitriy Morozov
Merged CGAL 3.3 changes with the work on ARVineyard
2007-08-17, by Dmitriy Morozov
Work in progress on ARVineyard and KineticSort. Commit to merge in CGAL 3.3 changes.
2007-08-17, by Dmitriy Morozov
tests/geometry now match the include/ breakup and are switched to CMake
2007-08-15, by Dmitriy Morozov
Fixed the mislabeled Case 1.2
dev
2008-04-04, by Dmitriy Morozov
Added Poincare sphere example
dev
2008-03-26, by Dmitriy Morozov
Fixed to compile with GCC 4.3
dev
2008-03-26, by Dmitriy Morozov
Fixed CGAL assertion failures in alphashapes (explicitly checking for infinite simplices)
dev
2008-03-19, by Dmitriy Morozov
Added ability to disable the use of DSR-PDB (disabled by default)
dev
2008-03-14, by Dmitriy Morozov
Normalized persistence (#cff) + unpaired simplices output pairs with 0
fitness
2008-03-14, by Dmitriy Morozov
avida-landscape: added MST (fixing #919) + switched to boost::program_options
fitness
2008-02-25, by Dmitriy Morozov
avida-landscape pairs maxima of fitness rather than minima
fitness
2008-02-25, by Dmitriy Morozov
avida-landscape computes 0-dimensional persistence of the fitness landscape
2008-02-17, by Dmitriy Morozov
Merged the branch resulting from the upstream pull
2008-02-17, by Dmitriy Morozov
Started examples/fitness/avida-landscape
2008-02-17, by Dmitriy Morozov
Added initial Avida code (computes 0-dimensional persistence of the hamming distance function)
2007-12-27, by Dmitriy Morozov
LowerStarFiltration provides a base class for VertexType
2008-02-17, by Dmitriy Morozov
Added issues
2008-02-17, by Dmitriy Morozov
Don't print a line if counters unused; in example/alphashapes converted cout to rInfo
2007-11-25, by Dmitriy Morozov
Added 2D alpha shape filtration example
2007-10-11, by Dmitriy Morozov
Added ability to not store trails in pair_simplices() computation
2007-09-20, by Dmitriy Morozov
Added counter of total trail and cycle lengths. Added CountBy.
2007-09-20, by Dmitriy Morozov
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