| Mon, 22 Sep 2008 21:53:25 -0700 |
Dmitriy Morozov |
Switching README to PanDoc
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| Mon, 22 Sep 2008 21:53:16 -0700 |
Dmitriy Morozov |
Added Rips complex-based distance computation to fitness
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| Mon, 22 Sep 2008 21:49:22 -0700 |
Dmitriy Morozov |
Added ExplicitDistance + Evaluator to Rips complexes
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| Mon, 15 Sep 2008 16:41:18 -0700 |
Dmitriy Morozov |
Merged in Rips complexes
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| Mon, 15 Sep 2008 16:40:03 -0700 |
Dmitriy Morozov |
Added initial code for Rips complexes
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| Mon, 15 Sep 2008 16:38:54 -0700 |
Dmitriy Morozov |
Added join() operation for a Simplex
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| Mon, 15 Sep 2008 16:33:34 -0700 |
Dmitriy Morozov |
Removed inclusion of seemingly unnecessary boost/serialization/is_abstract.hpp header
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| Tue, 09 Sep 2008 18:04:04 -0700 |
Dmitriy Morozov |
Converted issues to Maildir format, added Boost 1.36 issue
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| Wed, 03 Sep 2008 10:59:35 -0700 |
Dmitriy Morozov |
Added cmake_minimum_required for compatibility with CMake 2.6
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| Fri, 04 Apr 2008 21:14:44 -0400 |
Dmitriy Morozov |
Merge in AR branch
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| Wed, 19 Mar 2008 13:50:51 -0400 |
Dmitriy Morozov |
Fixed #c42 for ar-vineyard
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| Wed, 19 Mar 2008 12:50:35 -0400 |
Dmitriy Morozov |
Merged in upstream changes and reopened #c42
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| Sun, 02 Mar 2008 16:42:33 -0500 |
Dmitriy Morozov |
KineticEvaluator takes the maximum time between the two simulators
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| Sun, 02 Mar 2008 16:11:05 -0500 |
Dmitriy Morozov |
Small logging additions + maintain_lazy = false + eventqueue
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| Sat, 01 Mar 2008 04:48:49 -0500 |
Dmitriy Morozov |
Marked #c66 and #d2a as fixed (fixes in f236c7d659d0 and abba2950aced, respectively)
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| Fri, 29 Feb 2008 19:43:11 -0500 |
Dmitriy Morozov |
Fixed Vineyard to preserve the vine addresses after we add a new dimension vine (was a major bug)
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| Fri, 29 Feb 2008 15:46:12 -0500 |
Dmitriy Morozov |
Using two simulators in ARVineyard (one for simplices and one for trajectories)
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| Fri, 29 Feb 2008 14:39:48 -0500 |
Dmitriy Morozov |
ConeSimplex and ARConeSimplex3D adjusted to work correctly with operator<(), operator==(), and boundary()
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| Wed, 27 Feb 2008 17:44:46 -0500 |
Dmitriy Morozov |
ConeSimplex correctly reports dimension()
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| Wed, 27 Feb 2008 16:32:12 -0500 |
Dmitriy Morozov |
program_options + trajectory knees
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| Wed, 27 Feb 2008 07:57:45 -0500 |
Dmitriy Morozov |
Merged upstream changes (to get boost::program_options setup in CMake)
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| Mon, 25 Feb 2008 16:54:34 -0500 |
Dmitriy Morozov |
Merged in fitness branch
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| Wed, 27 Feb 2008 07:56:26 -0500 |
Dmitriy Morozov |
ar-vinyeard compiles and runs:
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| Tue, 26 Feb 2008 18:25:27 -0500 |
Dmitriy Morozov |
Added intostring() issue (#89a)
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| Tue, 26 Feb 2008 16:45:25 -0500 |
Dmitriy Morozov |
KineticSort can deal with equal trajectories:
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| Tue, 26 Feb 2008 16:15:12 -0500 |
Dmitriy Morozov |
Fixed UPolynomial<T>::sign_at_negative_infinity() + Simulator::add()
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| Tue, 26 Feb 2008 08:02:56 -0500 |
Dmitriy Morozov |
Added and fixed CGAL debugging problem (issue #c42)
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| Mon, 25 Feb 2008 11:43:33 -0500 |
Dmitriy Morozov |
Added EventQueue efficiency issue (#ebd)
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| Mon, 25 Feb 2008 04:37:49 -0500 |
Dmitriy Morozov |
Initial commit of KineticSort-based ARVineyard
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| Mon, 25 Feb 2008 04:33:13 -0500 |
Dmitriy Morozov |
Issue #cd7: incorrect UPolynomial<double>::sign_at()
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| Fri, 22 Feb 2008 18:29:43 -0500 |
Dmitriy Morozov |
Fixed Simulator not processing events correctly
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| Fri, 22 Feb 2008 13:06:40 -0500 |
Dmitriy Morozov |
Fixed segfault in test-kinetic-sort (#b5d)
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| Thu, 21 Feb 2008 06:49:06 -0500 |
Dmitriy Morozov |
Added segfault in test-kinetic-sort issue
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| Thu, 21 Feb 2008 04:50:09 -0500 |
Dmitriy Morozov |
Changed PolynomialKernel to FunctionKernel
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| Tue, 19 Feb 2008 09:10:51 -0500 |
Dmitriy Morozov |
Changed geometry to RLog-based logging and counters
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| Tue, 19 Feb 2008 07:26:01 -0500 |
Dmitriy Morozov |
Added class groups to Doxygen documentation
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| Tue, 19 Feb 2008 06:56:49 -0500 |
Dmitriy Morozov |
Merged in changes from master
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| Tue, 19 Feb 2008 06:51:23 -0500 |
Dmitriy Morozov |
Commit to merge in changes from master.
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| Fri, 24 Aug 2007 16:58:25 -0400 |
Dmitriy Morozov |
Fixed handling of degeneracies in KineticSort, Simulator is aware of the sign of the RationalFunction
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| Fri, 17 Aug 2007 15:08:27 -0400 |
Dmitriy Morozov |
Merged CGAL 3.3 changes with the work on ARVineyard
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| Fri, 17 Aug 2007 15:04:28 -0400 |
Dmitriy Morozov |
Work in progress on ARVineyard and KineticSort. Commit to merge in CGAL 3.3 changes.
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| Wed, 15 Aug 2007 11:52:17 -0400 |
Dmitriy Morozov |
tests/geometry now match the include/ breakup and are switched to CMake
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| Fri, 04 Apr 2008 16:17:28 -0400 |
Dmitriy Morozov |
Fixed the mislabeled Case 1.2
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| Wed, 26 Mar 2008 05:53:03 -0400 |
Dmitriy Morozov |
Added Poincare sphere example
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| Wed, 26 Mar 2008 05:52:39 -0400 |
Dmitriy Morozov |
Fixed to compile with GCC 4.3
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| Wed, 19 Mar 2008 12:43:33 -0400 |
Dmitriy Morozov |
Fixed CGAL assertion failures in alphashapes (explicitly checking for infinite simplices)
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| Fri, 14 Mar 2008 20:21:15 -0400 |
Dmitriy Morozov |
Added ability to disable the use of DSR-PDB (disabled by default)
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| Fri, 14 Mar 2008 18:35:41 -0400 |
Dmitriy Morozov |
Normalized persistence (#cff) + unpaired simplices output pairs with 0
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| Mon, 25 Feb 2008 16:24:29 -0500 |
Dmitriy Morozov |
avida-landscape: added MST (fixing #919) + switched to boost::program_options
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| Mon, 25 Feb 2008 04:39:27 -0500 |
Dmitriy Morozov |
avida-landscape pairs maxima of fitness rather than minima
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| Sun, 17 Feb 2008 16:32:33 -0500 |
Dmitriy Morozov |
avida-landscape computes 0-dimensional persistence of the fitness landscape
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| Sun, 17 Feb 2008 09:16:30 -0500 |
Dmitriy Morozov |
Merged the branch resulting from the upstream pull
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| Sun, 17 Feb 2008 09:16:00 -0500 |
Dmitriy Morozov |
Started examples/fitness/avida-landscape
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| Thu, 27 Dec 2007 00:00:00 -0500 |
Dmitriy Morozov |
Added initial Avida code (computes 0-dimensional persistence of the hamming distance function)
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| Sun, 17 Feb 2008 08:47:20 -0500 |
Dmitriy Morozov |
LowerStarFiltration provides a base class for VertexType
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| Sun, 17 Feb 2008 08:23:55 -0500 |
Dmitriy Morozov |
Added issues
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| Sun, 25 Nov 2007 09:12:36 -0500 |
Dmitriy Morozov |
Don't print a line if counters unused; in example/alphashapes converted cout to rInfo
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| Thu, 11 Oct 2007 11:46:00 -0400 |
Dmitriy Morozov |
Added 2D alpha shape filtration example
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| Thu, 20 Sep 2007 08:02:49 -0400 |
Dmitriy Morozov |
Added ability to not store trails in pair_simplices() computation
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| Thu, 20 Sep 2007 07:31:40 -0400 |
Dmitriy Morozov |
Added counter of total trail and cycle lengths. Added CountBy.
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