--- a/README	Fri Sep 14 17:32:11 2007 -0400
+++ b/README	Sat Sep 15 04:42:15 2007 -0400
@@ -1,11 +1,11 @@
 Dependencies
   CGAL-3.3 -    for alpha-shapes and kinetic data structures
   DSR-PDB -     for reading in PDB files
-  cmake -       for controlling the build process
+  CMake -       for controlling the build process
   boost -       great set of C++ libraries
   Doxygen -     for building documentation
-  libcwd -      for debugging only (is not needed by default)
-  synaps -      for solving polynomials (for kinetic kernel), which in turn requires GMP
+  rlog -        for logging only (is not needed by default)
+  SYNAPS -      for solving polynomials (for kinetic kernel), which in turn requires GMP
 
 Configuration
   The path to CGAL's Makefile is expected to be set in $CGAL_MAKEFILE, the rest
@@ -20,9 +20,10 @@
   make
   
   In the cmake line you can provide -Ddebug:bool=on to turn on debugging,
-  -Dcounters:bool=on to turn on counters, -Doptimize:int=3 would set
-  optimization to -O3. All of this can be set using a text user interface by
-  running ccmake instead of cmake.
+  -Dcounters:bool=on to turn on counters, -Doptimize:bool=on to turn on
+  optimization.  Depending on the combination of debugging and optimization, a
+  particular CMAKE_CXX_FLAGS* is chosen.  All of this can be set using a text
+  user interface by running ccmake instead of cmake.
 
 Author
   Dmitriy Morozov <morozov@cs.duke.edu>