| 2008-04-05 |
Dmitriy Morozov |
Merge in AR branch
dev
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changeset |
files
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| 2008-03-19 |
Dmitriy Morozov |
Fixed #c42 for ar-vineyard
ar
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changeset |
files
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| 2008-03-19 |
Dmitriy Morozov |
Merged in upstream changes and reopened #c42
ar
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changeset |
files
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| 2008-03-02 |
Dmitriy Morozov |
KineticEvaluator takes the maximum time between the two simulators
ar
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changeset |
files
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| 2008-03-02 |
Dmitriy Morozov |
Small logging additions + maintain_lazy = false + eventqueue
ar
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changeset |
files
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| 2008-03-01 |
Dmitriy Morozov |
Marked #c66 and #d2a as fixed (fixes in f236c7d659d0 and abba2950aced, respectively)
ar
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changeset |
files
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| 2008-03-01 |
Dmitriy Morozov |
Fixed Vineyard to preserve the vine addresses after we add a new dimension vine (was a major bug)
ar
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changeset |
files
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| 2008-02-29 |
Dmitriy Morozov |
Using two simulators in ARVineyard (one for simplices and one for trajectories)
ar
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changeset |
files
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| 2008-02-29 |
Dmitriy Morozov |
ConeSimplex and ARConeSimplex3D adjusted to work correctly with operator<(), operator==(), and boundary()
ar
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changeset |
files
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| 2008-02-27 |
Dmitriy Morozov |
ConeSimplex correctly reports dimension()
ar
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changeset |
files
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| 2008-02-27 |
Dmitriy Morozov |
program_options + trajectory knees
ar
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changeset |
files
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| 2008-02-27 |
Dmitriy Morozov |
Merged upstream changes (to get boost::program_options setup in CMake)
ar
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changeset |
files
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| 2008-02-25 |
Dmitriy Morozov |
Merged in fitness branch
dev
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changeset |
files
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| 2008-02-27 |
Dmitriy Morozov |
ar-vinyeard compiles and runs:
ar
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changeset |
files
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| 2008-02-26 |
Dmitriy Morozov |
Added intostring() issue (#89a)
ar
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changeset |
files
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| 2008-02-26 |
Dmitriy Morozov |
KineticSort can deal with equal trajectories:
ar
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changeset |
files
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| 2008-02-26 |
Dmitriy Morozov |
Fixed UPolynomial<T>::sign_at_negative_infinity() + Simulator::add()
ar
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changeset |
files
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| 2008-02-26 |
Dmitriy Morozov |
Added and fixed CGAL debugging problem (issue #c42)
ar
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changeset |
files
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| 2008-02-25 |
Dmitriy Morozov |
Added EventQueue efficiency issue (#ebd)
ar
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changeset |
files
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| 2008-02-25 |
Dmitriy Morozov |
Initial commit of KineticSort-based ARVineyard
ar
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changeset |
files
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| 2008-02-25 |
Dmitriy Morozov |
Issue #cd7: incorrect UPolynomial<double>::sign_at()
ar
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changeset |
files
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| 2008-02-22 |
Dmitriy Morozov |
Fixed Simulator not processing events correctly
ar
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changeset |
files
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| 2008-02-22 |
Dmitriy Morozov |
Fixed segfault in test-kinetic-sort (#b5d)
ar
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changeset |
files
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| 2008-02-21 |
Dmitriy Morozov |
Added segfault in test-kinetic-sort issue
ar
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changeset |
files
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| 2008-02-21 |
Dmitriy Morozov |
Changed PolynomialKernel to FunctionKernel
ar
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changeset |
files
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| 2008-02-19 |
Dmitriy Morozov |
Changed geometry to RLog-based logging and counters
ar
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changeset |
files
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| 2008-02-19 |
Dmitriy Morozov |
Added class groups to Doxygen documentation
ar
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changeset |
files
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| 2008-02-19 |
Dmitriy Morozov |
Merged in changes from master
ar
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changeset |
files
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| 2008-02-19 |
Dmitriy Morozov |
Commit to merge in changes from master.
ar
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changeset |
files
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| 2007-08-24 |
Dmitriy Morozov |
Fixed handling of degeneracies in KineticSort, Simulator is aware of the sign of the RationalFunction
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changeset |
files
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| 2007-08-17 |
Dmitriy Morozov |
Merged CGAL 3.3 changes with the work on ARVineyard
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changeset |
files
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| 2007-08-17 |
Dmitriy Morozov |
Work in progress on ARVineyard and KineticSort. Commit to merge in CGAL 3.3 changes.
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changeset |
files
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| 2007-08-15 |
Dmitriy Morozov |
tests/geometry now match the include/ breakup and are switched to CMake
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changeset |
files
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| 2008-04-04 |
Dmitriy Morozov |
Fixed the mislabeled Case 1.2
dev
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changeset |
files
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| 2008-03-26 |
Dmitriy Morozov |
Added Poincare sphere example
dev
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changeset |
files
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| 2008-03-26 |
Dmitriy Morozov |
Fixed to compile with GCC 4.3
dev
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changeset |
files
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| 2008-03-19 |
Dmitriy Morozov |
Fixed CGAL assertion failures in alphashapes (explicitly checking for infinite simplices)
dev
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changeset |
files
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| 2008-03-15 |
Dmitriy Morozov |
Added ability to disable the use of DSR-PDB (disabled by default)
dev
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changeset |
files
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| 2008-03-14 |
Dmitriy Morozov |
Normalized persistence (#cff) + unpaired simplices output pairs with 0
fitness
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changeset |
files
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| 2008-02-25 |
Dmitriy Morozov |
avida-landscape: added MST (fixing #919) + switched to boost::program_options
fitness
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changeset |
files
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| 2008-02-25 |
Dmitriy Morozov |
avida-landscape pairs maxima of fitness rather than minima
fitness
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changeset |
files
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| 2008-02-17 |
Dmitriy Morozov |
avida-landscape computes 0-dimensional persistence of the fitness landscape
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changeset |
files
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| 2008-02-17 |
Dmitriy Morozov |
Merged the branch resulting from the upstream pull
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changeset |
files
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| 2008-02-17 |
Dmitriy Morozov |
Started examples/fitness/avida-landscape
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changeset |
files
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| 2007-12-27 |
Dmitriy Morozov |
Added initial Avida code (computes 0-dimensional persistence of the hamming distance function)
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changeset |
files
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| 2008-02-17 |
Dmitriy Morozov |
LowerStarFiltration provides a base class for VertexType
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changeset |
files
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| 2008-02-17 |
Dmitriy Morozov |
Added issues
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changeset |
files
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| 2007-11-25 |
Dmitriy Morozov |
Don't print a line if counters unused; in example/alphashapes converted cout to rInfo
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changeset |
files
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| 2007-10-11 |
Dmitriy Morozov |
Added 2D alpha shape filtration example
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changeset |
files
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| 2007-09-20 |
Dmitriy Morozov |
Added ability to not store trails in pair_simplices() computation
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changeset |
files
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| 2007-09-20 |
Dmitriy Morozov |
Added counter of total trail and cycle lengths. Added CountBy.
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changeset |
files
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| 2007-09-18 |
Dmitriy Morozov |
Minor fixed to CMake (fixed include directory for rlog)
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changeset |
files
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| 2007-09-18 |
Dmitriy Morozov |
Removed sz from Cycle (size is kept track of in the parent)
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changeset |
files
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| 2007-09-15 |
Dmitriy Morozov |
Counter omits color codes only if connected to a TTY
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changeset |
files
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| 2007-09-15 |
Dmitriy Morozov |
Updated README to reflect changes to the logging
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changeset |
files
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| 2007-09-14 |
Dmitriy Morozov |
Changes to CMakeLists:
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changeset |
files
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| 2007-09-14 |
Dmitriy Morozov |
Added counters to Cycle, added timestamp to Counter output
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changeset |
files
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| 2007-09-14 |
Dmitriy Morozov |
Fixed logging and counters
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changeset |
files
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| 2007-09-13 |
Dmitriy Morozov |
Counters straightened out (at least the code compiles)
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changeset |
files
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| 2007-09-13 |
Dmitriy Morozov |
Merged in changes from master
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changeset |
files
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