| 2008-02-25 |
Dmitriy Morozov |
Initial commit of KineticSort-based ARVineyard
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| 2008-02-25 |
Dmitriy Morozov |
Issue #cd7: incorrect UPolynomial<double>::sign_at()
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| 2008-02-22 |
Dmitriy Morozov |
Fixed Simulator not processing events correctly
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| 2008-02-22 |
Dmitriy Morozov |
Fixed segfault in test-kinetic-sort (#b5d)
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| 2008-02-21 |
Dmitriy Morozov |
Added segfault in test-kinetic-sort issue
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| 2008-02-21 |
Dmitriy Morozov |
Changed PolynomialKernel to FunctionKernel
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| 2008-02-19 |
Dmitriy Morozov |
Changed geometry to RLog-based logging and counters
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| 2008-02-19 |
Dmitriy Morozov |
Added class groups to Doxygen documentation
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| 2008-02-19 |
Dmitriy Morozov |
Merged in changes from master
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| 2008-02-19 |
Dmitriy Morozov |
Commit to merge in changes from master.
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| 2007-08-24 |
Dmitriy Morozov |
Fixed handling of degeneracies in KineticSort, Simulator is aware of the sign of the RationalFunction
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| 2007-08-17 |
Dmitriy Morozov |
Merged CGAL 3.3 changes with the work on ARVineyard
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| 2007-08-17 |
Dmitriy Morozov |
Work in progress on ARVineyard and KineticSort. Commit to merge in CGAL 3.3 changes.
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| 2007-08-15 |
Dmitriy Morozov |
tests/geometry now match the include/ breakup and are switched to CMake
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| 2008-04-04 |
Dmitriy Morozov |
Fixed the mislabeled Case 1.2
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| 2008-03-26 |
Dmitriy Morozov |
Added Poincare sphere example
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| 2008-03-26 |
Dmitriy Morozov |
Fixed to compile with GCC 4.3
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| 2008-03-19 |
Dmitriy Morozov |
Fixed CGAL assertion failures in alphashapes (explicitly checking for infinite simplices)
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| 2008-03-15 |
Dmitriy Morozov |
Added ability to disable the use of DSR-PDB (disabled by default)
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| 2008-03-14 |
Dmitriy Morozov |
Normalized persistence (#cff) + unpaired simplices output pairs with 0
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| 2008-02-25 |
Dmitriy Morozov |
avida-landscape: added MST (fixing #919) + switched to boost::program_options
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| 2008-02-25 |
Dmitriy Morozov |
avida-landscape pairs maxima of fitness rather than minima
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| 2008-02-17 |
Dmitriy Morozov |
avida-landscape computes 0-dimensional persistence of the fitness landscape
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| 2008-02-17 |
Dmitriy Morozov |
Merged the branch resulting from the upstream pull
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| 2008-02-17 |
Dmitriy Morozov |
Started examples/fitness/avida-landscape
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| 2007-12-27 |
Dmitriy Morozov |
Added initial Avida code (computes 0-dimensional persistence of the hamming distance function)
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| 2008-02-17 |
Dmitriy Morozov |
LowerStarFiltration provides a base class for VertexType
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| 2008-02-17 |
Dmitriy Morozov |
Added issues
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| 2007-11-25 |
Dmitriy Morozov |
Don't print a line if counters unused; in example/alphashapes converted cout to rInfo
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| 2007-10-11 |
Dmitriy Morozov |
Added 2D alpha shape filtration example
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| 2007-09-20 |
Dmitriy Morozov |
Added ability to not store trails in pair_simplices() computation
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| 2007-09-20 |
Dmitriy Morozov |
Added counter of total trail and cycle lengths. Added CountBy.
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| 2007-09-18 |
Dmitriy Morozov |
Minor fixed to CMake (fixed include directory for rlog)
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| 2007-09-18 |
Dmitriy Morozov |
Removed sz from Cycle (size is kept track of in the parent)
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| 2007-09-15 |
Dmitriy Morozov |
Counter omits color codes only if connected to a TTY
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| 2007-09-15 |
Dmitriy Morozov |
Updated README to reflect changes to the logging
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| 2007-09-14 |
Dmitriy Morozov |
Changes to CMakeLists:
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| 2007-09-14 |
Dmitriy Morozov |
Added counters to Cycle, added timestamp to Counter output
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| 2007-09-14 |
Dmitriy Morozov |
Fixed logging and counters
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| 2007-09-13 |
Dmitriy Morozov |
Counters straightened out (at least the code compiles)
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| 2007-09-13 |
Dmitriy Morozov |
Merged in changes from master
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| 2007-09-13 |
Dmitriy Morozov |
Changed counters and added setup for new logging. Everything but tests is broken.
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| 2007-09-12 |
Dmitriy Morozov |
Merged in README changes from master
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| 2007-09-12 |
Dmitriy Morozov |
Changed SimplexWithVertices<V>::VertexContainer to std::vector<V> from std::set<V>
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| 2007-09-12 |
Dmitriy Morozov |
Fixed typos in README
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| 2007-08-16 |
Dmitriy Morozov |
Fixed to compile with CGAL 3.3
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| 2007-08-15 |
Dmitriy Morozov |
Merged geometry and include breakup with AR vineyard
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| 2007-08-15 |
Dmitriy Morozov |
Initial AR vineyard commit (CGAL based, and not working)
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| 2007-08-14 |
Dmitriy Morozov |
Broke include/ into separate topology/ and utilities/ subdirectories
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| 2007-07-01 |
Dmitriy Morozov |
Initial geometry commit
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| 2007-05-23 |
Dmitriy Morozov |
Added Cech complex example
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| 2007-02-07 |
Dmitriy Morozov |
Switched counters to macros
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| 2007-01-31 |
Dmitriy Morozov |
Alpha shapes examples compile with debugging enabled (Added AlphaSimplex3D::boundary())
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| 2007-01-30 |
Dmitriy Morozov |
Switched to CMake
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| 2007-01-24 |
Dmitriy Morozov |
Added computation of PDBDistanceGrid for all atoms of the backbone (not just alpha-carbons)
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| 2007-01-20 |
Dmitriy Morozov |
Removed config/ directory
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| 2007-01-12 |
Dmitriy Morozov |
Options read from home or config directories; documentation built by default
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| 2007-01-01 |
Dmitriy Morozov |
Added option to maintain lazy RU-decomposition during transpositions. Plus minor fixes.
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| 2006-12-29 |
Dmitriy Morozov |
Added operator() to OrderList<T>::OrderComparison
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| 2006-12-25 |
Dmitriy Morozov |
Added pair_simplices() to Filtration (without arguments)
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