Instrumented code for counting:
* added counters to addition in cohomology and ChainWrapper
* rips-pairwise-cohomology counts the maximum elements stored in the cycles
* added alphashapes3d-cohomology
* moved progress_display from DynamicPersistence to StaticPersistence
def add_simplices(zz, simplices, complex, birth, report_local = False):
deaths = []
for s in simplices:
i,d = zz.add([complex[sb] for sb in s.boundary], (s.dimension(), birth))
complex[s] = i
if d is not None:
if report_local or not d == birth:
deaths.append(d)
return deaths
def remove_simplices(zz, simplices, complex, birth, report_local = False):
deaths = []
for s in simplices:
d = zz.remove(complex[s], (s.dimension(), birth))
complex[s] = None
if d is not None:
if report_local or not d == birth:
deaths.append(d)
return deaths