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−Dependencies
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−  CGAL-3.2 -    for alpha-shapes and kinetic data structures
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−  DSR-PDB -     for reading in PDB files
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−  scons -       for controlling the build process
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−  boost -       great set of C++ libraries
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−  Doxygen -     for building documentation
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−
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−Configuration
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−  Local configuration is read from config/HOSTNAME.py 
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−  The path to and architecture of CGAL are important variables (cgal_path and
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−  cgal_architecture respectively).
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−
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−Building
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−  To build examples run "scons" at the top level, or "scons -u" in the specific
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−  examples/ subdirectory.
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−  "scons debug=1" turns on debugging. "scons counters=1" turns on counters. 
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−  "scons optimize=3" turns on -O3 optimizations.
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−
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−Author
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−  Dmitriy Morozov <morozov@cs.duke.edu>