author Aravindakshan Babu <>
Tue, 17 Aug 2010 22:19:19 -0700
changeset 219 5311343eb2f5
parent 111 958dec48d946
child 271 0cdf9e9eed48
permissions -rw-r--r--
Added documentation for the python classes Point and PersistenceDiagram. Removed the __sub__ method for PersistenceDiagram. Minor renaming. Renamed BottleneckDistance to bottleneck_distance. Renamed intervals iterator for PersistenceDiagram to points. Seems in better conformance with usage.

project                     (Dionysus)
cmake_minimum_required      (VERSION 2.4)

option                      (logging            "Build Dionysus with logging on"        OFF)
option                      (counters           "Build Dionysus with counters on"       OFF)
option                      (debug              "Build Dionysus with debugging on"      OFF)
option                      (optimize           "Build Dionysus with optimization"      ON)
option                      (use_dsrpdb         "Build examples that use DSR-PDB"       OFF)
option                      (use_synaps         "Build examples that use SYNAPS"        OFF)

# Find everything that's always required
find_package                (Boost REQUIRED COMPONENTS program_options python serialization signals)
find_package                (Doxygen)
if                          (use_dsrpdb)
    find_library            (dsrpdb_LIBRARY             NAMES dsrpdb)
    find_path               (dsrpdb_INCLUDE_DIR         dsrpdb/Protein.h)
endif                       (use_dsrpdb)

find_package                (CGAL)
#add_definitions             (-DCGAL_NO_ASSERTIONS -DCGAL_NO_PRECONDITIONS)

if                          (use_synaps)
    add_definitions         (-DBOOST_UBLAS_TYPE_CHECK=0)
    find_library            (synaps_LIBRARY             NAMES synaps)
    set                     (synaps_libraries           ${synaps_LIBRARY}
endif                       (use_synaps)

# Debugging
if                          (debug)
    if                      (optimize)
            set             (cxx_flags                  ${CMAKE_CXX_FLAGS_RELWITHDEBINFO})
    else                    (optimize)
            set             (cxx_flags                  ${CMAKE_CXX_FLAGS_DEBUG})
    endif                   (optimize)
else                        (debug)
    if                      (optimize)
            set             (cxx_flags                  ${CMAKE_CXX_FLAGS_RELEASE})
    else                    (optimize)
            set             (cxx_flags                  ${CMAKE_CXX_FLAGS})
    endif                   (optimize)
endif                       (debug)
add_definitions             (${cxx_flags})

# Logging
if                          (logging)
    find_library            (rlog_LIBRARY               NAMES rlog)
    find_path               (rlog_INCLUDE_DIR           rlog/rlog.h)
    set                     (rlog_INCLUDE_DIR           ${rlog_INCLUDE_DIR})
    add_definitions         (-DLOGGING -DRLOG_COMPONENT=dionysus)
    set                     (libraries                  ${libraries} ${rlog_LIBRARY})
endif                       (logging)

# Counters
if                          (counters)
    add_definitions         (-DCOUNTERS)
endif                       (counters)

# Set includes
include_directories         (${CMAKE_CURRENT_BINARY_DIR}

# Doxygen (FIXME)
if                          (DOXYGEN_FOUND)
#   add_custom_target       (docs ALL 
#                           ${DOXYGEN_EXECUTABLE} Doxyfile
#                           DEPENDS Doxyfile)
endif                       (DOXYGEN_FOUND)

# Process subdirectories
add_subdirectory            (examples)
add_subdirectory            (tests)
add_subdirectory            (tools)
add_subdirectory            (bindings)