Added documentation for the python classes Point and PersistenceDiagram. Removed the __sub__ method for PersistenceDiagram. Minor renaming.
Renamed BottleneckDistance to bottleneck_distance.
Renamed intervals iterator for PersistenceDiagram to points. Seems in better conformance with usage.
from _dionysus import *
from distances import l2, ExplicitDistances, points_file
from zigzag import *
def init_with_none(self, iter, data = None): # convenience: data defaults to None
self._cpp_init_(iter, data)
def repr_with_data(self):
str = self._cpp_repr_()
if type(self.data) == float:
str += ' %f' % self.data
return str
Simplex._cpp_init_ = Simplex.__init__
Simplex.__init__ = init_with_none
Simplex._cpp_repr_ = Simplex.__repr__
Simplex.__repr__ = repr_with_data
def data_cmp(s1, s2):
return cmp(s1.data, s2.data)
def data_dim_cmp(s1,s2):
return cmp(s1.dimension(), s2.dimension()) or data_cmp(s1,s2)
def vertex_dim_cmp(s1, s2):
return cmp(s1.dimension(), s2.dimension()) or vertex_cmp(s1, s2)
# TBD: Port this into C++
def point_iterator( point ):
yield point.x
yield point.y
if not point.data is None:
yield point.data
Point.__iter__ = point_iterator
def persistence_diagram_iterator( self ):
"""
This returns a list of lists.
Whereas the intervals iterator returns a list of dionysus.Point objects
"""
# self.intervals is an iterator object,
# whose next method returns a Point object
for intv in self.points:
yield [ x for x in intv ]
PersistenceDiagram.__iter__ = persistence_diagram_iterator