Debugged ZigzagPersistence (having added heavier consistency checking) * Added DEBUG_CONTAINERS option (uses std::__debug::* containers for chains and in ZigzagPersistence) * Added SizeStorage specialization for std::deque<T> * ZigzagPersistence got a lot more consistency checking (in debug mode only, which now crawls); as a result it's been debugged (running on non-trivial examples) * examples/rips/rips-zigzag takes command-line options * added ChainWrapper::clear() * added Simplex::VertexDimensionComparison * added PairwiseDistances class (for computing distances between points in a container according to a distance functor)

From: Dmitriy Morozov <dmitriy@mrzv.org>
Date: Fri, 26 Dec 2008 21:34:29
State: new
Subject: namespace dionysus
Message-Id: <957a589d7c6c3fa8-0-artemis@rufus>

Put everything in namespace dionysus. Besides making things more organized, it
will also allow us to get rid of the problem of having to typedef Simplex<...>
to Smplx. If it were in dionysus namespace, then 
`typedef dionysus::Simplex<...> Simplex;` would work.