Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea: * added program options to pdbdistance-vineyard * pdbdistance-vineyard takes frame list in a file * more logging * verification of pairing after vertex transpositions (commented out)

[kinetic]
category=kinetic

[functionality]
category=functionality

[installation]
category=installation

[efficiency]
category=efficiency