Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
From: Dmitriy Morozov <morozov@cs.duke.edu>
Date: Thu, 10 Jan 2008 04:36:03 -0500
State: resolved
Subject: Remove maintenance of "lazy decomposition"
Message-Id: <8a14b4849071f910-0-artemis@metatron>
resolution: fixed
The maintenance of "lazy decomposition" (added in [a0736dd3c671]) is
incorrect (due to original theoretical errors). Remove it completely.