Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
From: Dmitriy Morozov <morozov@cs.duke.edu>
Date: Fri, 04 Apr 2008 16:16:41
Subject: Handled but mislabeled
Message-Id: <8aa25bcae639fc99-bbca170318887f06-artemis@moscow>
References: <8aa25bcae639fc99-0-artemis@moscow>
In-Reply-To: <8aa25bcae639fc99-0-artemis@moscow>
The situation is already handled in the code, but was mislabeled as Case 1.1.2