Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
From: Dmitriy Morozov <dmitriy@mrzv.org>
Date: Fri, 26 Dec 2008 21:34:29
State: new
Subject: namespace dionysus
Message-Id: <957a589d7c6c3fa8-0-artemis@rufus>
category: installation
Put everything in namespace dionysus. Besides making things more organized, it
will also allow us to get rid of the problem of having to typedef Simplex<...>
to Smplx. If it were in dionysus namespace, then
`typedef dionysus::Simplex<...> Simplex;` would work.