Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
From: Dmitriy Morozov <morozov@cs.duke.edu>
Date: Tue, 26 Feb 2008 08:00:50 -0500
Subject: Fixed by adding CGAL_NO_ASSERTIONS
Message-Id: <c420501cc5285bbc-d75d85d67d421f7e-artemis@metatron>
References: <c420501cc5285bbc-0-artemis@metatron>
In-Reply-To: <c420501cc5285bbc-0-artemis@metatron>
I suspect the bug in CGAL (since everything works fine with CGAL_NO_ASSERTIONS
set), so I disabled the offending assertion (and all the rest of them) by
setting a CXX flag in CMakeLists.txt.