Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
From: Dmitriy Morozov <morozov@cs.duke.edu>
Date: Tue, 11 Mar 2008 04:05:25 -0400
State: fixed
Subject: Scale fitness
Message-Id: <cff004eda75a26c2-0-artemis@metatron>
When computing fitness persistence, divide all values by the maximum fitness.
That way it's possible to compare persistence diagrams for runs in different
environments.