Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
From: Dmitriy Morozov <dmitriy@mrzv.org>
Date: Fri, 10 Apr 2009 14:33:18
State: new
Subject: Intrusive containers for ZigzagPersistence
Message-Id: <e6f52c44ef26f4a7-0-artemis@cole>
category: efficiency
Use Boost's intrusive containers to store rows in ZigzagPersistence. This
should get rid of the inefficiencies associated with the simplex removal
(through ZigzagPersistence::remove()).