Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
#include <topology/chain.h>
#include "static-persistence.h"
namespace dionysus {
namespace python {
typedef SPersistence::Chain VChain;
} } // namespace dionysus::python