Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
#ifndef __PYTHON_STATIC_PERSISTENCE_H__
#define __PYTHON_STATIC_PERSISTENCE_H__
#include <topology/static-persistence.h>
#include "filtration.h"
namespace dionysus {
namespace python {
typedef StaticPersistence<> SPersistence;
typedef SPersistence::OrderElement SPersistenceNode;
typedef SPersistence::OrderIndex SPersistenceIndex;
typedef SPersistence::SimplexMap<PythonFiltration>
PersistenceSimplexMap;
} } // namespace dionysus::python
#endif