Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
set (targets
ar-vineyard)
add_definitions (${cgal_cxxflags})
foreach (t ${targets})
add_executable (${t} ${t}.cpp ${external_sources})
target_link_libraries (${t} ${libraries} ${cgal_libraries}
${Boost_SIGNALS_LIBRARY}
${Boost_PROGRAM_OPTIONS_LIBRARY})
endforeach (t)