Fixed a serious bug in DynamicPersistenceTrails + LSVineyard sorts filtration by attachment + miscellanea:
* added program options to pdbdistance-vineyard
* pdbdistance-vineyard takes frame list in a file
* more logging
* verification of pairing after vertex transpositions (commented out)
set (libraries ${libraries}
${Boost_PROGRAM_OPTIONS_LIBRARY})
# Build compare-diagrams
add_executable (bottleneck bottleneck.cpp)
target_link_libraries (bottleneck ${libraries})