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Merged CGAL 3.3 changes with the work on ARVineyard
2007-08-17, by Dmitriy Morozov
Work in progress on ARVineyard and KineticSort. Commit to merge in CGAL 3.3 changes.
2007-08-17, by Dmitriy Morozov
tests/geometry now match the include/ breakup and are switched to CMake
2007-08-15, by Dmitriy Morozov
Fixed the mislabeled Case 1.2
dev
2008-04-04, by Dmitriy Morozov
Added Poincare sphere example
dev
2008-03-26, by Dmitriy Morozov
Fixed to compile with GCC 4.3
dev
2008-03-26, by Dmitriy Morozov
Fixed CGAL assertion failures in alphashapes (explicitly checking for infinite simplices)
dev
2008-03-19, by Dmitriy Morozov
Added ability to disable the use of DSR-PDB (disabled by default)
dev
2008-03-14, by Dmitriy Morozov
Normalized persistence (#cff) + unpaired simplices output pairs with 0
fitness
2008-03-14, by Dmitriy Morozov
avida-landscape: added MST (fixing #919) + switched to boost::program_options
fitness
2008-02-25, by Dmitriy Morozov
avida-landscape pairs maxima of fitness rather than minima
fitness
2008-02-25, by Dmitriy Morozov
avida-landscape computes 0-dimensional persistence of the fitness landscape
2008-02-17, by Dmitriy Morozov
Merged the branch resulting from the upstream pull
2008-02-17, by Dmitriy Morozov
Started examples/fitness/avida-landscape
2008-02-17, by Dmitriy Morozov
Added initial Avida code (computes 0-dimensional persistence of the hamming distance function)
2007-12-27, by Dmitriy Morozov
LowerStarFiltration provides a base class for VertexType
2008-02-17, by Dmitriy Morozov
Added issues
2008-02-17, by Dmitriy Morozov
Don't print a line if counters unused; in example/alphashapes converted cout to rInfo
2007-11-25, by Dmitriy Morozov
Added 2D alpha shape filtration example
2007-10-11, by Dmitriy Morozov
Added ability to not store trails in pair_simplices() computation
2007-09-20, by Dmitriy Morozov
Added counter of total trail and cycle lengths. Added CountBy.
2007-09-20, by Dmitriy Morozov
Minor fixed to CMake (fixed include directory for rlog)
2007-09-18, by Dmitriy Morozov
Removed sz from Cycle (size is kept track of in the parent)
2007-09-18, by Dmitriy Morozov
Counter omits color codes only if connected to a TTY
2007-09-15, by Dmitriy Morozov
Updated README to reflect changes to the logging
2007-09-15, by Dmitriy Morozov
Changes to CMakeLists:
2007-09-14, by Dmitriy Morozov
Added counters to Cycle, added timestamp to Counter output
2007-09-14, by Dmitriy Morozov
Fixed logging and counters
2007-09-14, by Dmitriy Morozov
Counters straightened out (at least the code compiles)
2007-09-13, by Dmitriy Morozov
Merged in changes from master
2007-09-13, by Dmitriy Morozov
Changed counters and added setup for new logging. Everything but tests is broken.
2007-09-13, by Dmitriy Morozov
Merged in README changes from master
2007-09-12, by Dmitriy Morozov
Changed SimplexWithVertices<V>::VertexContainer to std::vector<V> from std::set<V>
2007-09-12, by Dmitriy Morozov
Fixed typos in README
2007-09-12, by Dmitriy Morozov
Fixed to compile with CGAL 3.3
2007-08-16, by Dmitriy Morozov
Merged geometry and include breakup with AR vineyard
2007-08-15, by Dmitriy Morozov
Initial AR vineyard commit (CGAL based, and not working)
2007-08-15, by Dmitriy Morozov
Broke include/ into separate topology/ and utilities/ subdirectories
2007-08-14, by Dmitriy Morozov
Initial geometry commit
2007-07-01, by Dmitriy Morozov
Added Cech complex example
2007-05-23, by Dmitriy Morozov
Switched counters to macros
2007-02-07, by Dmitriy Morozov
Alpha shapes examples compile with debugging enabled (Added AlphaSimplex3D::boundary())
2007-01-31, by Dmitriy Morozov
Switched to CMake
2007-01-30, by Dmitriy Morozov
Added computation of PDBDistanceGrid for all atoms of the backbone (not just alpha-carbons)
2007-01-24, by Dmitriy Morozov
Removed config/ directory
2007-01-20, by Dmitriy Morozov
Options read from home or config directories; documentation built by default
2007-01-12, by Dmitriy Morozov
Added option to maintain lazy RU-decomposition during transpositions. Plus minor fixes.
2007-01-01, by Dmitriy Morozov
Added operator() to OrderList<T>::OrderComparison
2006-12-29, by Dmitriy Morozov
Added pair_simplices() to Filtration (without arguments)
2006-12-25, by Dmitriy Morozov
Added examples/alphashapes
2006-12-22, by Dmitriy Morozov
Added combustion-vineyard, Grid2DVineyard records diagram after adding a grid
2006-12-22, by Dmitriy Morozov
Removed missing tests/test-realtype from tests/SConscript
2006-12-21, by Dmitriy Morozov
Switched to a new architecture (Vineyard is a visitor for Filtration),
2006-12-21, by Dmitriy Morozov
Split OrderList into OrderList and ConsistencyList. Made efficient insertions possible.
2006-12-16, by Dmitriy Morozov
Moved config to a separate directory
2006-12-04, by Dmitriy Morozov
Cleaned up AssertMsg in debug.h, and adjusted assertions in filtration.hpp
2006-12-03, by Dmitriy Morozov
Disabled missing qt4 tool, and added missing src/Sconcript
2006-10-30, by Dmitriy Morozov
Initial conversion to Dionysus architecture
2006-10-30, by Dmitriy Morozov
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