| Wed, 19 Mar 2008 12:43:33 -0400 |
Dmitriy Morozov |
Fixed CGAL assertion failures in alphashapes (explicitly checking for infinite simplices)
dev
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| Fri, 14 Mar 2008 20:21:15 -0400 |
Dmitriy Morozov |
Added ability to disable the use of DSR-PDB (disabled by default)
dev
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| Fri, 14 Mar 2008 18:35:41 -0400 |
Dmitriy Morozov |
Normalized persistence (#cff) + unpaired simplices output pairs with 0
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| Mon, 25 Feb 2008 16:24:29 -0500 |
Dmitriy Morozov |
avida-landscape: added MST (fixing #919) + switched to boost::program_options
fitness
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| Mon, 25 Feb 2008 04:39:27 -0500 |
Dmitriy Morozov |
avida-landscape pairs maxima of fitness rather than minima
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| Sun, 17 Feb 2008 16:32:33 -0500 |
Dmitriy Morozov |
avida-landscape computes 0-dimensional persistence of the fitness landscape
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| Sun, 17 Feb 2008 09:16:30 -0500 |
Dmitriy Morozov |
Merged the branch resulting from the upstream pull
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| Sun, 17 Feb 2008 09:16:00 -0500 |
Dmitriy Morozov |
Started examples/fitness/avida-landscape
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| Thu, 27 Dec 2007 00:00:00 -0500 |
Dmitriy Morozov |
Added initial Avida code (computes 0-dimensional persistence of the hamming distance function)
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| Sun, 17 Feb 2008 08:47:20 -0500 |
Dmitriy Morozov |
LowerStarFiltration provides a base class for VertexType
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| Sun, 17 Feb 2008 08:23:55 -0500 |
Dmitriy Morozov |
Added issues
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| Sun, 25 Nov 2007 09:12:36 -0500 |
Dmitriy Morozov |
Don't print a line if counters unused; in example/alphashapes converted cout to rInfo
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| Thu, 11 Oct 2007 11:46:00 -0400 |
Dmitriy Morozov |
Added 2D alpha shape filtration example
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| Thu, 20 Sep 2007 08:02:49 -0400 |
Dmitriy Morozov |
Added ability to not store trails in pair_simplices() computation
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| Thu, 20 Sep 2007 07:31:40 -0400 |
Dmitriy Morozov |
Added counter of total trail and cycle lengths. Added CountBy.
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| Tue, 18 Sep 2007 05:45:19 -0400 |
Dmitriy Morozov |
Minor fixed to CMake (fixed include directory for rlog)
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| Tue, 18 Sep 2007 05:45:04 -0400 |
Dmitriy Morozov |
Removed sz from Cycle (size is kept track of in the parent)
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| Sat, 15 Sep 2007 14:31:36 -0400 |
Dmitriy Morozov |
Counter omits color codes only if connected to a TTY
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| Sat, 15 Sep 2007 04:42:15 -0400 |
Dmitriy Morozov |
Updated README to reflect changes to the logging
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| Fri, 14 Sep 2007 17:32:11 -0400 |
Dmitriy Morozov |
Changes to CMakeLists:
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| Fri, 14 Sep 2007 06:34:43 -0400 |
Dmitriy Morozov |
Added counters to Cycle, added timestamp to Counter output
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| Fri, 14 Sep 2007 05:51:51 -0400 |
Dmitriy Morozov |
Fixed logging and counters
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| Thu, 13 Sep 2007 10:31:39 -0400 |
Dmitriy Morozov |
Counters straightened out (at least the code compiles)
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| Thu, 13 Sep 2007 04:43:33 -0400 |
Dmitriy Morozov |
Merged in changes from master
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| Thu, 13 Sep 2007 04:42:39 -0400 |
Dmitriy Morozov |
Changed counters and added setup for new logging. Everything but tests is broken.
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| Wed, 12 Sep 2007 09:40:23 -0400 |
Dmitriy Morozov |
Merged in README changes from master
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| Wed, 12 Sep 2007 09:39:34 -0400 |
Dmitriy Morozov |
Changed SimplexWithVertices<V>::VertexContainer to std::vector<V> from std::set<V>
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| Wed, 12 Sep 2007 08:28:33 -0400 |
Dmitriy Morozov |
Fixed typos in README
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| Thu, 16 Aug 2007 17:12:52 -0400 |
Dmitriy Morozov |
Fixed to compile with CGAL 3.3
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| Wed, 15 Aug 2007 11:39:34 -0400 |
Dmitriy Morozov |
Merged geometry and include breakup with AR vineyard
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| Wed, 15 Aug 2007 11:25:35 -0400 |
Dmitriy Morozov |
Initial AR vineyard commit (CGAL based, and not working)
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| Tue, 14 Aug 2007 17:15:08 -0400 |
Dmitriy Morozov |
Broke include/ into separate topology/ and utilities/ subdirectories
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| Sun, 01 Jul 2007 00:00:00 -0400 |
Dmitriy Morozov |
Initial geometry commit
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files
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| Wed, 23 May 2007 10:48:04 -0400 |
Dmitriy Morozov |
Added Cech complex example
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| Wed, 07 Feb 2007 14:00:39 -0500 |
Dmitriy Morozov |
Switched counters to macros
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| Wed, 31 Jan 2007 16:53:35 -0500 |
Dmitriy Morozov |
Alpha shapes examples compile with debugging enabled (Added AlphaSimplex3D::boundary())
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| Tue, 30 Jan 2007 13:51:04 -0500 |
Dmitriy Morozov |
Switched to CMake
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| Wed, 24 Jan 2007 17:50:45 -0500 |
Dmitriy Morozov |
Added computation of PDBDistanceGrid for all atoms of the backbone (not just alpha-carbons)
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| Sat, 20 Jan 2007 13:39:51 -0500 |
Dmitriy Morozov |
Removed config/ directory
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| Fri, 12 Jan 2007 12:49:29 -0500 |
Dmitriy Morozov |
Options read from home or config directories; documentation built by default
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| Mon, 01 Jan 2007 11:45:28 -0500 |
Dmitriy Morozov |
Added option to maintain lazy RU-decomposition during transpositions. Plus minor fixes.
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| Fri, 29 Dec 2006 18:20:50 -0500 |
Dmitriy Morozov |
Added operator() to OrderList<T>::OrderComparison
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| Mon, 25 Dec 2006 12:28:13 -0500 |
Dmitriy Morozov |
Added pair_simplices() to Filtration (without arguments)
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| Fri, 22 Dec 2006 12:52:35 -0500 |
Dmitriy Morozov |
Added examples/alphashapes
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| Fri, 22 Dec 2006 10:25:26 -0500 |
Dmitriy Morozov |
Added combustion-vineyard, Grid2DVineyard records diagram after adding a grid
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| Thu, 21 Dec 2006 13:37:23 -0500 |
Dmitriy Morozov |
Removed missing tests/test-realtype from tests/SConscript
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| Thu, 21 Dec 2006 13:32:34 -0500 |
Dmitriy Morozov |
Switched to a new architecture (Vineyard is a visitor for Filtration),
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| Sat, 16 Dec 2006 15:34:46 -0500 |
Dmitriy Morozov |
Split OrderList into OrderList and ConsistencyList. Made efficient insertions possible.
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| Mon, 04 Dec 2006 22:39:35 -0500 |
Dmitriy Morozov |
Moved config to a separate directory
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| Sun, 03 Dec 2006 22:38:34 -0500 |
Dmitriy Morozov |
Cleaned up AssertMsg in debug.h, and adjusted assertions in filtration.hpp
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| Mon, 30 Oct 2006 14:40:34 -0500 |
Dmitriy Morozov |
Disabled missing qt4 tool, and added missing src/Sconcript
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| Mon, 30 Oct 2006 14:20:45 -0500 |
Dmitriy Morozov |
Initial conversion to Dionysus architecture
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