Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Jul 2009 00:59:32 -0700] rev 137
Added field arithmetic to CohomologyPersistence (Zp + Q)
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 14 May 2009 14:04:43 -0700] rev 136
Moved PairwiseDistances and ExplicitDistances into include/geometry/distances.h
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 14 May 2009 13:09:06 -0700] rev 135
read_points() does not need ambient dimension and ignores lines starting with '#'
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 11 May 2009 12:45:49 -0700] rev 134
Added documentation; for now mostly for the Python bindings
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 07 May 2009 14:53:13 -0700] rev 133
Touch up to compile with GCC 4.4
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 29 Apr 2009 10:16:03 -0700] rev 132
Cleaned up simplex comparison functions, rip-pairwise.py outputs a diagram, auxilliary add_simplices() + remove_simplices() for zigzags
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 16 Apr 2009 00:23:01 -0700] rev 131
Alphashapes and Python bindings
* converted alphashapes2d to the new format
* added Python bindings for alphashapes
* added sample alphashapes.py that dynamically distinguishes between 2D and 3D
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 15 Apr 2009 14:17:21 -0700] rev 130
Placed all Python bindings code into dionysus::python namespace
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 14 Apr 2009 14:38:08 -0700] rev 129
Cleaned up Python bindings to restore functionality:
* StaticPersistence is iterable, its nodes are usable (sign, pair, cycle)
* StaticPersistence knows how to map its nodes into Filtration indices
* moved PythonCmp into utils.h
* minor cosmetic changes
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 13 Apr 2009 20:44:31 -0700] rev 128
Renamed header files in bindings/python to get rid of the "python-" prefix
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 13 Apr 2009 20:38:46 -0700] rev 127
Changes in Python Bindings:
* the exposed C++ simplex has Empty data
* Python Simplex constructor with data as well as data-based
comparison functions are implemented in pure Python
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 11 Apr 2009 10:29:53 -0700] rev 126
Added Python bindings for the Rips complex + an example
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 01 May 2009 15:09:38 -0700] rev 125
Cleaned up traits (chain and container) for static- and dynamic-persistence
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 01 May 2009 15:36:25 -0700] rev 124
Added tools/extract-diagram + minor fixes
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 10 Apr 2009 14:35:43 -0700] rev 123
Added intrusive containers issue and issue filters
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Apr 2009 14:43:37 -0700] rev 122
Moved l2distance.h into include/geometry
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Apr 2009 14:39:12 -0700] rev 121
Added categories to some of the issues
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 09 Apr 2009 12:58:10 -0700] rev 120
Fixed distance to diagonal calculation + added stand-alone bottleneck distance tool
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 25 Mar 2009 09:56:52 -0700] rev 119
Added ZigzagPersistence::is_alive() + consistency zigzag outputs betti 1 at each stage
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 24 Mar 2009 15:17:39 -0700] rev 118
Added consistency zigzag
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 23 Mar 2009 11:40:29 -0700] rev 117
Merged in cohomology branch
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 27 Feb 2009 10:14:26 -0800] rev 116
Added CohomologyPersistence and Rips pairwise distances computation
Dmitriy Morozov <dmitriy@mrzv.org> [Sun, 22 Mar 2009 11:18:07 -0700] rev 115
Added DynamicPersistenceChains (no dynamic part yet)
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 03 Feb 2009 11:31:10 -0800] rev 114
Updated Rips zigzags
* Updated to use Bron-Kerbosch
* Compute in the order of increasing epsilon, and decreasing point sizes
* Split into plain zigzag (rips-zigzag) and image zigzag (rips-image-zigzag)
* Added minor enhancements (show_progress and timers)
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 31 Jan 2009 23:02:22 -0800] rev 113
Switched Rips complex computation to Bron-Kerbosch algorithm
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 29 Jan 2009 10:16:56 -0800] rev 112
Added python bindings for ZigzagPersistence (as well as ImageZigzagPersistence)
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 28 Jan 2009 14:57:17 -0800] rev 111
Switched to CGAL 3.4 (native CMake configuration): for now only alphashapes
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 20 Jan 2009 10:53:35 -0800] rev 110
Implemented ImageZigzagPersistence
* Changed ZigzagPersistence to support a visitor, and implemented
ImageZigzagPersistence
* examples/rips/rips-zigzag now computes using ImageZigzagPersistence
* PersistenceDiagram no longer records zero persistence pairs
* Added utilities/memory.h with report_memory() function
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 12 Jan 2009 15:33:04 -0800] rev 109
Debugged ZigzagPersistence (having added heavier consistency checking)
* Added DEBUG_CONTAINERS option (uses std::__debug::* containers for chains
and in ZigzagPersistence)
* Added SizeStorage specialization for std::deque<T>
* ZigzagPersistence got a lot more consistency checking (in debug mode only,
which now crawls); as a result it's been debugged (running on non-trivial examples)
* examples/rips/rips-zigzag takes command-line options
* added ChainWrapper::clear()
* added Simplex::VertexDimensionComparison
* added PairwiseDistances class (for computing distances between points in a
container according to a distance functor)
Dmitriy Morozov <dmitriy@mrzv.org> [Fri, 02 Jan 2009 14:54:15 -0800] rev 108
Added rips-zigzag; in the process caught a number of bugs in ZigzagPersistence (added check_consistency() to it)
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 31 Dec 2008 11:54:34 -0800] rev 107
Added DequeChains (for ZigzagPersistence)
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 31 Dec 2008 11:51:14 -0800] rev 106
Added ZigzagPersistence
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 27 Dec 2008 14:51:38 -0800] rev 105
Merged in Python branch
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 25 Dec 2008 13:09:00 -0800] rev 104
Initial commit of Python bindings
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 25 Dec 2008 13:08:41 -0800] rev 103
Empty is now a template, replaced RecursiveIterator with boost::counting_iterator
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 23 Dec 2008 15:10:15 -0800] rev 102
Removed boundary() from AlphaSimplex3D
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 23 Dec 2008 11:40:38 -0800] rev 101
Changed Simplex::boundary() to be iterator-based (replaced it with boundary_begin() and boundary_end())
Dmitriy Morozov <dmitriy@mrzv.org> [Sat, 27 Dec 2008 14:33:25 -0800] rev 100
Commit before merging in Python branch:
* converted more examples: poincare, rips, some fitness
* two generators for Rips complexes
* ChainWrapper uses stl algorithms for everything,
added CountingBackInserter and switched SizeStorage to use operators
* retabbing files along the way
* added #957a (namespace dionysus)
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 25 Dec 2008 14:24:02 -0800] rev 99
Initial addition of tools/diagram-viewer
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 23 Dec 2008 11:02:08 -0800] rev 98
Closed #8a1 and #96b, added #de6 and #f64
Dmitriy Morozov <dmitriy@mrzv.org> [Thu, 18 Dec 2008 16:43:42 -0800] rev 97
Intermediate commit while converting to the new architecture
* Converted Filtration into StaticPersistence and DynamicPersistenceTrails
(both right now work with the underlying std::vector rather than std::list order)
* Filtration is now just an auxilliary glue (a map between Complex and Persistence)
* Whether chains are vectors or lists can be interchanged
* Added PersistenceDiagram with a simple bottleneck_distance() function
* Converted triangle, alphashapes3d, and cech-complex examples
* Lots of organizational changes
(factoring utilities out into containers.h, indirect.h, property-maps.h)
* Trying to document along the way with NaturalDocs-type comments
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 22 Sep 2008 21:53:25 -0700] rev 96
Switching README to PanDoc
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 22 Sep 2008 21:53:16 -0700] rev 95
Added Rips complex-based distance computation to fitness
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 22 Sep 2008 21:49:22 -0700] rev 94
Added ExplicitDistance + Evaluator to Rips complexes
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 15 Sep 2008 16:41:18 -0700] rev 93
Merged in Rips complexes
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 15 Sep 2008 16:40:03 -0700] rev 92
Added initial code for Rips complexes
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 15 Sep 2008 16:38:54 -0700] rev 91
Added join() operation for a Simplex
Dmitriy Morozov <dmitriy@mrzv.org> [Mon, 15 Sep 2008 16:33:34 -0700] rev 90
Removed inclusion of seemingly unnecessary boost/serialization/is_abstract.hpp header
Dmitriy Morozov <dmitriy@mrzv.org> [Tue, 09 Sep 2008 18:04:04 -0700] rev 89
Converted issues to Maildir format, added Boost 1.36 issue
Dmitriy Morozov <dmitriy@mrzv.org> [Wed, 03 Sep 2008 10:59:35 -0700] rev 88
Added cmake_minimum_required for compatibility with CMake 2.6
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 04 Apr 2008 21:14:44 -0400] rev 87
Merge in AR branch
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 19 Mar 2008 13:50:51 -0400] rev 86
Fixed #c42 for ar-vineyard
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 19 Mar 2008 12:50:35 -0400] rev 85
Merged in upstream changes and reopened #c42
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 02 Mar 2008 16:42:33 -0500] rev 84
KineticEvaluator takes the maximum time between the two simulators
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 02 Mar 2008 16:11:05 -0500] rev 83
Small logging additions + maintain_lazy = false + eventqueue
- Filtration::transpose( ..., maintain_lazy = false )
- EventQueue inserts a new event after all the ones equal to it, not before
Dmitriy Morozov <morozov@cs.duke.edu> [Sat, 01 Mar 2008 04:48:49 -0500] rev 82
Marked #c66 and #d2a as fixed (fixes in f236c7d659d0 and abba2950aced, respectively)
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 29 Feb 2008 19:43:11 -0500] rev 81
Fixed Vineyard to preserve the vine addresses after we add a new dimension vine (was a major bug)
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 29 Feb 2008 15:46:12 -0500] rev 80
Using two simulators in ARVineyard (one for simplices and one for trajectories)
- Fixes #c66
- Simulator::reached_infinity() examines the queue instead of
keeping state in a variable
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 29 Feb 2008 14:39:48 -0500] rev 79
ConeSimplex and ARConeSimplex3D adjusted to work correctly with operator<(), operator==(), and boundary()
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 27 Feb 2008 17:44:46 -0500] rev 78
ConeSimplex correctly reports dimension()
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 27 Feb 2008 16:32:12 -0500] rev 77
program_options + trajectory knees
- added boost::program_options
- recording knees when trajectories change
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 27 Feb 2008 07:57:45 -0500] rev 76
Merged upstream changes (to get boost::program_options setup in CMake)
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 25 Feb 2008 16:54:34 -0500] rev 75
Merged in fitness branch
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 27 Feb 2008 07:56:26 -0500] rev 74
ar-vinyeard compiles and runs:
- ar-function-kernel uses int for sign rather than bool in sign_at
- switched to dealing with a single functions themselves in value_at
- order of thresholds is handled correctly in ar-vineyard (max is the last one)
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 26 Feb 2008 18:25:27 -0500] rev 73
Added intostring() issue (#89a)
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 26 Feb 2008 16:45:25 -0500] rev 72
KineticSort can deal with equal trajectories:
UPolynomial::sign_at_negative_infinity() can handle 0 and so can Simulator::add()
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 26 Feb 2008 16:15:12 -0500] rev 71
Fixed UPolynomial<T>::sign_at_negative_infinity() + Simulator::add()
Bug in the former and resulting logic problems in the latter.
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 26 Feb 2008 08:02:56 -0500] rev 70
Added and fixed CGAL debugging problem (issue #c42)
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 25 Feb 2008 11:43:33 -0500] rev 69
Added EventQueue efficiency issue (#ebd)
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 25 Feb 2008 04:37:49 -0500] rev 68
Initial commit of KineticSort-based ARVineyard
Compiles, but needs to be runtime debugged.
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 25 Feb 2008 04:33:13 -0500] rev 67
Issue #cd7: incorrect UPolynomial<double>::sign_at()
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 22 Feb 2008 18:29:43 -0500] rev 66
Fixed Simulator not processing events correctly
Event that is being processed needed to be removed from the queue while its own
process() method ran.
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 22 Feb 2008 13:06:40 -0500] rev 65
Fixed segfault in test-kinetic-sort (#b5d)
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 21 Feb 2008 06:49:06 -0500] rev 64
Added segfault in test-kinetic-sort issue
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 21 Feb 2008 04:50:09 -0500] rev 63
Changed PolynomialKernel to FunctionKernel
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 19 Feb 2008 09:10:51 -0500] rev 62
Changed geometry to RLog-based logging and counters
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 19 Feb 2008 07:26:01 -0500] rev 61
Added class groups to Doxygen documentation
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 19 Feb 2008 06:56:49 -0500] rev 60
Merged in changes from master
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 19 Feb 2008 06:51:23 -0500] rev 59
Commit to merge in changes from master.
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 24 Aug 2007 16:58:25 -0400] rev 58
Fixed handling of degeneracies in KineticSort, Simulator is aware of the sign of the RationalFunction
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 17 Aug 2007 15:08:27 -0400] rev 57
Merged CGAL 3.3 changes with the work on ARVineyard
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 17 Aug 2007 15:04:28 -0400] rev 56
Work in progress on ARVineyard and KineticSort. Commit to merge in CGAL 3.3 changes.
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 15 Aug 2007 11:52:17 -0400] rev 55
tests/geometry now match the include/ breakup and are switched to CMake
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 04 Apr 2008 16:17:28 -0400] rev 54
Fixed the mislabeled Case 1.2
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 26 Mar 2008 05:53:03 -0400] rev 53
Added Poincare sphere example
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 26 Mar 2008 05:52:39 -0400] rev 52
Fixed to compile with GCC 4.3
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 19 Mar 2008 12:43:33 -0400] rev 51
Fixed CGAL assertion failures in alphashapes (explicitly checking for infinite simplices)
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 14 Mar 2008 20:21:15 -0400] rev 50
Added ability to disable the use of DSR-PDB (disabled by default)
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 14 Mar 2008 18:35:41 -0400] rev 49
Normalized persistence (#cff) + unpaired simplices output pairs with 0
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 25 Feb 2008 16:24:29 -0500] rev 48
avida-landscape: added MST (fixing #919) + switched to boost::program_options
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 25 Feb 2008 04:39:27 -0500] rev 47
avida-landscape pairs maxima of fitness rather than minima
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 17 Feb 2008 16:32:33 -0500] rev 46
avida-landscape computes 0-dimensional persistence of the fitness landscape
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 17 Feb 2008 09:16:30 -0500] rev 45
Merged the branch resulting from the upstream pull
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 17 Feb 2008 09:16:00 -0500] rev 44
Started examples/fitness/avida-landscape
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 27 Dec 2007 00:00:00 -0500] rev 43
Added initial Avida code (computes 0-dimensional persistence of the hamming distance function)
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 17 Feb 2008 08:47:20 -0500] rev 42
LowerStarFiltration provides a base class for VertexType
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 17 Feb 2008 08:23:55 -0500] rev 41
Added issues
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 25 Nov 2007 09:12:36 -0500] rev 40
Don't print a line if counters unused; in example/alphashapes converted cout to rInfo
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 11 Oct 2007 11:46:00 -0400] rev 39
Added 2D alpha shape filtration example
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 20 Sep 2007 08:02:49 -0400] rev 38
Added ability to not store trails in pair_simplices() computation
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 20 Sep 2007 07:31:40 -0400] rev 37
Added counter of total trail and cycle lengths. Added CountBy.
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 18 Sep 2007 05:45:19 -0400] rev 36
Minor fixed to CMake (fixed include directory for rlog)
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 18 Sep 2007 05:45:04 -0400] rev 35
Removed sz from Cycle (size is kept track of in the parent)
Dmitriy Morozov <morozov@cs.duke.edu> [Sat, 15 Sep 2007 14:31:36 -0400] rev 34
Counter omits color codes only if connected to a TTY
Dmitriy Morozov <morozov@cs.duke.edu> [Sat, 15 Sep 2007 04:42:15 -0400] rev 33
Updated README to reflect changes to the logging
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 14 Sep 2007 17:32:11 -0400] rev 32
Changes to CMakeLists:
* Optimize and debug options derive flags from CMKAE_CXX_FLAGS*
* Moved CGAL CXX flags from the top level to the specific locations where they are required
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 14 Sep 2007 06:34:43 -0400] rev 31
Added counters to Cycle, added timestamp to Counter output
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 14 Sep 2007 05:51:51 -0400] rev 30
Fixed logging and counters
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 13 Sep 2007 10:31:39 -0400] rev 29
Counters straightened out (at least the code compiles)
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 13 Sep 2007 04:43:33 -0400] rev 28
Merged in changes from master
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 13 Sep 2007 04:42:39 -0400] rev 27
Changed counters and added setup for new logging. Everything but tests is broken.
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 12 Sep 2007 09:40:23 -0400] rev 26
Merged in README changes from master
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 12 Sep 2007 09:39:34 -0400] rev 25
Changed SimplexWithVertices<V>::VertexContainer to std::vector<V> from std::set<V>
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 12 Sep 2007 08:28:33 -0400] rev 24
Fixed typos in README
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 16 Aug 2007 17:12:52 -0400] rev 23
Fixed to compile with CGAL 3.3
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 15 Aug 2007 11:39:34 -0400] rev 22
Merged geometry and include breakup with AR vineyard
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 15 Aug 2007 11:25:35 -0400] rev 21
Initial AR vineyard commit (CGAL based, and not working)
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 14 Aug 2007 17:15:08 -0400] rev 20
Broke include/ into separate topology/ and utilities/ subdirectories
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 01 Jul 2007 00:00:00 -0400] rev 19
Initial geometry commit
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 23 May 2007 10:48:04 -0400] rev 18
Added Cech complex example
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 07 Feb 2007 14:00:39 -0500] rev 17
Switched counters to macros
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 31 Jan 2007 16:53:35 -0500] rev 16
Alpha shapes examples compile with debugging enabled (Added AlphaSimplex3D::boundary())
Dmitriy Morozov <morozov@cs.duke.edu> [Tue, 30 Jan 2007 13:51:04 -0500] rev 15
Switched to CMake
Dmitriy Morozov <morozov@cs.duke.edu> [Wed, 24 Jan 2007 17:50:45 -0500] rev 14
Added computation of PDBDistanceGrid for all atoms of the backbone (not just alpha-carbons)
Dmitriy Morozov <morozov@cs.duke.edu> [Sat, 20 Jan 2007 13:39:51 -0500] rev 13
Removed config/ directory
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 12 Jan 2007 12:49:29 -0500] rev 12
Options read from home or config directories; documentation built by default
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 01 Jan 2007 11:45:28 -0500] rev 11
Added option to maintain lazy RU-decomposition during transpositions. Plus minor fixes.
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 29 Dec 2006 18:20:50 -0500] rev 10
Added operator() to OrderList<T>::OrderComparison
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 25 Dec 2006 12:28:13 -0500] rev 9
Added pair_simplices() to Filtration (without arguments)
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 22 Dec 2006 12:52:35 -0500] rev 8
Added examples/alphashapes
Dmitriy Morozov <morozov@cs.duke.edu> [Fri, 22 Dec 2006 10:25:26 -0500] rev 7
Added combustion-vineyard, Grid2DVineyard records diagram after adding a grid
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 21 Dec 2006 13:37:23 -0500] rev 6
Removed missing tests/test-realtype from tests/SConscript
Dmitriy Morozov <morozov@cs.duke.edu> [Thu, 21 Dec 2006 13:32:34 -0500] rev 5
Switched to a new architecture (Vineyard is a visitor for Filtration),
added LowerStarFilation, examples/grid (pdbdistance-vineyard in particular)
Dmitriy Morozov <morozov@cs.duke.edu> [Sat, 16 Dec 2006 15:34:46 -0500] rev 4
Split OrderList into OrderList and ConsistencyList. Made efficient insertions possible.
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 04 Dec 2006 22:39:35 -0500] rev 3
Moved config to a separate directory
Dmitriy Morozov <morozov@cs.duke.edu> [Sun, 03 Dec 2006 22:38:34 -0500] rev 2
Cleaned up AssertMsg in debug.h, and adjusted assertions in filtration.hpp
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 30 Oct 2006 14:40:34 -0500] rev 1
Disabled missing qt4 tool, and added missing src/Sconcript
Dmitriy Morozov <morozov@cs.duke.edu> [Mon, 30 Oct 2006 14:20:45 -0500] rev 0
Initial conversion to Dionysus architecture